Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K23
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    29   0.79 
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    29   1.0  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.4  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   1.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   4.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   4.2  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   4.2  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   5.6  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   7.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   9.8  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   9.8  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 120 PIKKMRKRKSLKLNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTSRKRV 284
           P KK        LNE+    S +      + EEF +DS      + D+NEP+++ + K V
Sbjct: 210 PKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTV 269

Query: 285 SKPPVN 302
            +  VN
Sbjct: 270 PEDVVN 275


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +3

Query: 57  SPKVKSD*RGSVSLSYFSRTIPIKKMRKRKSLKLNE-EDSDGSGQGAEPEEFQDSGEDWT 233
           SPK K +   S S    S +  + +  K+K   LNE ED D +G G    E  D  E   
Sbjct: 36  SPKKKKNTTSSGS----SESDSMSQNDKKKDSSLNESEDEDFAGFGESASE-NDELESAE 90

Query: 234 PDADSNEPASRTSRKRVSKPPVNNTKKKRK 323
            +A+++E +S  S+K  SK      KK +K
Sbjct: 91  SEAENDEESS--SQKSNSKESHAQRKKLQK 118


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 577 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 693
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 540 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 719
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 720 PRTDS 734
            R ++
Sbjct: 292 SRDNN 296


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/42 (26%), Positives = 14/42 (33%)
 Frame = -1

Query: 747 HIFPWSLCVDCDPVFRLWGNNCHGCQHSTQNTHMYICVKLFH 622
           H +PW L    D   R+W      C         Y+    FH
Sbjct: 105 HEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFH 146


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 150 LKLNEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKKR 320
           L L+EE+S+ S +  + ++    +D G +   D D         +K+ SK   +  KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195

Query: 321 K 323
           K
Sbjct: 196 K 196


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 639 KCTCVYSGWNVDNRDNYYPITEILDRNPRTDSKEICV 749
           KCT  +   N   RD+Y    EI  R  RT  + IC+
Sbjct: 234 KCTLQHPPGNEIYRDDYISFFEIDGRKQRTWCRNICL 270


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 162 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 245
           EE+ D  G+G E EE +D G+ D   D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 156 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 263
           ++ +D D S Q A  EE+ D  +D   D D NE ++
Sbjct: 228 IDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 588 LCHQFSTSSVHQVLILQYL 532
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 749 YTYFLGVCAWIAIQYFGYGVII 684
           Y YF GV AW ++ ++G  V++
Sbjct: 111 YGYFDGVPAWRSVHHYGEDVLL 132


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 156 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTSRKRVSKPPVN 302
           +N ED+         + F + G +    A+SN+  S  SRKR + P  N
Sbjct: 57  VNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGS--SRKRKNLPNEN 103


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 159 NEEDSDGSGQGAEPEEFQDSGEDWTPDADS 248
           N  D +GS + +  EE    GE  TP+ D+
Sbjct: 91  NGVDGEGSDESSSEEEEDSDGELVTPEVDA 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,522
Number of Sequences: 5004
Number of extensions: 68862
Number of successful extensions: 235
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)