Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K21
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta...   153   1e-37
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    60   2e-09
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    51   8e-07
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    51   8e-07
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    49   3e-06
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    39   0.005
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.55 
Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.55 
AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta
           subunit protein 4 protein.
          Length = 202

 Score =  153 bits (372), Expect = 1e-37
 Identities = 76/194 (39%), Positives = 122/194 (62%), Gaps = 3/194 (1%)
 Frame = +2

Query: 173 LLGIQCNDFVMIAADQSNSHSIMIMKDDE-EKIYKISDRLVMGVIGDSGDTNQFAEYIAK 349
           L+GI   ++V++AAD++      I+ D E +K Y++  +L M  IG+ GD  QF ++  +
Sbjct: 7   LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66

Query: 350 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 526
           N+QLY +RNGYE+ PS A  F RR++AE LRS   Y V+VL+GGY DKE+   L  +DYL
Sbjct: 67  NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126

Query: 527 ASSV-KVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV 703
           A+ + + P+   G+ G    +IMDR +KKD TE E   ++ KC+ E  +R   ++P ++V
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKV 186

Query: 704 TVVNRDGIKVLPTI 745
            ++++ G + L  +
Sbjct: 187 VIIDKKGYRKLDDV 200


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 37/153 (24%), Positives = 78/153 (50%)
 Frame = +2

Query: 200 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 379
           +++ AD   +   +I     EK++K+++ +     G + D +Q  + ++ N++L ++  G
Sbjct: 58  LVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117

Query: 380 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 559
            +     A    +++L  Y      Y   +L+GG D   GP LY      +++  PF A 
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173

Query: 560 GYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 658
           G G Y +++I++R  K D T+ EA  ++++ ++
Sbjct: 174 GSGSYAAITILERDFKVDMTKDEAEKLVQRALE 206


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 38/144 (26%), Positives = 66/144 (45%)
 Frame = +2

Query: 200 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 379
           +++A D   S    I      KI  I DR+V  + G + D   +   +AK   LY++R  
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 380 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 559
             +  SAA+ +    L  Y        V  ++ GYDK+ GP+++ +D      ++   + 
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVDSEGDRCQLKVCSV 199

Query: 560 GYGGYLSLSIMDRYHKKDATETEA 631
           G G   +  I+D ++K   T+ EA
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEA 223


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +2

Query: 182 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 358
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 359 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 538
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 539 KVPFAAHGYGGYLSLSIMD 595
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +2

Query: 182 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 358
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 359 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 538
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 539 KVPFAAHGYGGYLSLSIMD 595
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 5/197 (2%)
 Frame = +2

Query: 176 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 355
           LGI  ++ +++AA++ N H ++      EK+Y++SD +   V G + D N    ++    
Sbjct: 35  LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94

Query: 356 QLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMDYLA 529
             Y+   G E+               Y  +    P+ V++L  G+DK  G +LY  D   
Sbjct: 95  ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSG 154

Query: 530 SSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV-- 703
           +         G     +++++ + +K    E EA  +    ++ + K L V L + +V  
Sbjct: 155 NYTGWKATCIGSNHQAAVTLLKQEYKSPNLE-EAKQL---AIKVLWKTLDVKLASEKVEM 210

Query: 704 -TVVNRDGIKVLPTINS 751
             +  RDG  VL  + +
Sbjct: 211 AVLTRRDGKTVLEELTT 227


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 5/203 (2%)
 Frame = +2

Query: 137 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSG 316
           Y  K  N      + ++  D  +IA  +    S+ I+ D    +Y+IS  +    IG   
Sbjct: 27  YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85

Query: 317 DTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 487
           D     +        +K +NGY++ P    +    +L +Y   +         +L   YD
Sbjct: 86  DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144

Query: 488 KENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKK--DATETEAYDILKKCVQE 661
            E GPE+Y +D       +   + G     + S +++  KK  + T TEA ++  + +Q 
Sbjct: 145 DEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ- 203

Query: 662 VHKRLFVSLPNFQVTVVNRDGIK 730
               + V   + +V VV +D  K
Sbjct: 204 TSLGIDVRSKDLEVVVVTKDNSK 226


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
 Frame = +2

Query: 161 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEY 340
           N Q  +G++  D V++A +   S    ++ DD+ K+ +IS  +     G   D     + 
Sbjct: 30  NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85

Query: 341 IAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 514
             K    Y+M  G E+      +     + EY +S    P+  ++L+ G+DK  G  L F
Sbjct: 86  ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145


>Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 682 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 539
           +++SFVN +   L  VICLC   + F+V  + T   +   T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195


>Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 682 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 539
           +++SFVN +   L  VICLC   + F+V  + T   +   T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195


>AC006603-1|AAF39749.1|  772|Caenorhabditis elegans Hypothetical
           protein B0524.4 protein.
          Length = 772

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 563 YGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQVTVVNRDGIKVLPT 742
           + GYL+   + + HK   T  +A+DILK  ++ + K  F  +  +      +    VLP 
Sbjct: 187 FNGYLNAMTLLKKHKDQDTIEKAFDILKASIRAMQKLNFKDVEKYTTDASLKTLDSVLPE 246

Query: 743 I 745
           +
Sbjct: 247 L 247


>Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical
           protein F11C1.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
 Frame = +2

Query: 290 VMGVIGDSGDTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRN---LAEYLRSSTPYF 460
           V+G  G+ G    F   + +N+   + R G         + +  N   L   LR S  + 
Sbjct: 24  VLGNPGNDGFYTDFGRRLIRNLIAREERLGTRRVQFVFYTLSHLNHVLLPTSLRCSESHK 83

Query: 461 VNVLMGGYDKENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKD 613
           VN      D+      +  +YL    +V    HG G Y+ LSI+  Y K D
Sbjct: 84  VNERFSLADQVQHKLDFVKEYLPRGNRVYMFGHGDGAYMLLSILP-YIKDD 133


>U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical
           protein D1005.2 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 587 YSNLDIHHNHELQMVPSRLMLNSP*NTVQVHFLYHNHP 474
           +S   +HHNHEL   P   +  S  N+V+V  L   HP
Sbjct: 372 HSTFKVHHNHELGAPPVISLDPSIYNSVEVVDLKFPHP 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,869
Number of Sequences: 27780
Number of extensions: 350871
Number of successful extensions: 910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)