Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K19
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    37   0.003
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.84 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.84 

>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +3

Query: 198 EEQEISEKYSSLVNEAYKTLLEPLARGIYMLQLRG-KDIPEK-TEVDQKFLMKIM 356
           ++  ++++ S+ +++AY TL  PL R  Y+LQL+G   + E  +  D +FLM+IM
Sbjct: 105 KDAALAQRDSAELSKAYNTLKAPLTRAEYILQLQGINPVSEDISNSDPEFLMEIM 159


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -3

Query: 240 HLLRKNIFQIFLVLL*LYEHIMTVDGNM*SSVQSCQVAQPSPRIGLQNYNISFKITTLNI 61
           HL+R +   IF+VL  ++  +  +  N  S VQ       + + GL  Y   F ++T  +
Sbjct: 301 HLVRFSSLYIFIVLSQIFVLLRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTNAV 360

Query: 60  VEKFY 46
           +EK Y
Sbjct: 361 IEKGY 365


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +3

Query: 171  PS*YVHRVKEEQEISEKYSSLVNEAYKTLLEPLARGIYMLQLRGKDIPEKTEVDQKFLM 347
            P  +V+ +    EISE +S    +AY+ L+E + + +        D+  K +++ + ++
Sbjct: 1531 PGNFVNSITSLYEISESFSGETKQAYEQLVETMNKSVSPASEILSDLDNKQQLNDQIII 1589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,476
Number of Sequences: 5004
Number of extensions: 41046
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)