Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K14
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.62 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 754 IQSSRGINHFLHEYALXLQQTQSNHH 677
           I S   +  F+ +++L LQQ Q  HH
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHH 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 680 PWALATLLISSIINTV 633
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  FLKMLGAISRVGSG 62
           FLK LGA+   GSG
Sbjct: 172 FLKKLGAVDIAGSG 185


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 268 RSPRLVLEVAQHLGENTVRTIAMDGTE 348
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,498
Number of Sequences: 438
Number of extensions: 4896
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)