Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K09
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    31   0.54 
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005...    29   3.8  
02_02_0176 - 7477344-7477625                                           27   8.8  

>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 441 P*MCIFLLSGS*DILPPPQGSQSKGINLPCTSSY 340
           P  C  LLSG  D LPPP  + S+    PC+SS+
Sbjct: 102 PDYCAALLSGLSDHLPPPAAAASRVDPDPCSSSH 135


>02_05_0085 -
           25697860-25698142,25698631-25698946,25700481-25700518,
           25700955-25701036,25701815-25702016
          Length = 306

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -3

Query: 312 YPLKTIVEGSTPSTSWS*TFRRM--YLNTPDLSMSTLGTLWSEPDIFVV 172
           +PL ++V  + PS +W+ +F+     +  PD++ ST  +L  E ++ V+
Sbjct: 80  FPLISLVAANKPSIAWNCSFKEQTPIMKVPDVTKSTWQSLVVESELPVL 128


>02_02_0176 - 7477344-7477625
          Length = 93

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
 Frame = +2

Query: 356 GKLIPFDCE-----PWGGGRISHDPDNKKIHIYG 442
           G+  PFDC      PW  GR +  P   ++  YG
Sbjct: 25  GRCSPFDCSSSIPLPWSRGRDNGAPSKSRVKCYG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,661
Number of Sequences: 37544
Number of extensions: 376894
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)