Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K07
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...   251   8e-68
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.4  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   4.4  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   7.6  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score =  251 bits (615), Expect = 8e-68
 Identities = 122/206 (59%), Positives = 146/206 (70%), Gaps = 1/206 (0%)
 Frame = +1

Query: 220 LDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE 399
           L K  +E D   E +LR NP RFV+FPI+Y +IWQ YKKAEASFWT EE+DLSKDL DW+
Sbjct: 57  LGKKEDELD---EVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD 113

Query: 400 T-LKDSERHFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMY 576
             L   ER+FI  VLA+FAASDGIVNENL+ERFS EVQ+ EARC YGFQI +EN+HSE Y
Sbjct: 114 NKLNADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETY 173

Query: 577 SLLIDTYIRDPKERDFLFNAVETLPCVKKKADWALQWIASKTATFGERXXXXXXXXXXXX 756
           SLL+DTYIR+PKE+   F+A+ T+  +K KA WAL+WI  + +T+  R            
Sbjct: 174 SLLLDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWINDEDSTYAIRLVAFAAVEGIFF 233

Query: 757 XXXXXXXXWLKKRGLMPGLTFXNELI 834
                   WLKKRGLMPGLTF NELI
Sbjct: 234 SGSFASIFWLKKRGLMPGLTFSNELI 259


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 550 MENVHSEMYSLLIDTYIRDPKERDF 624
           + N H  +Y LL D Y++ P +R F
Sbjct: 61  LHNKHVSLYCLLSDRYLQPPSKRIF 85


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 163 PMKNSVLATKN-DNLTEEMDLDKNFEEFDPQKEPLL 267
           P  N +L T + D L   +D  K  +  DP+++PLL
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLL 191


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -2

Query: 750 DSXYSCKGNNPFTKCCSLACNPL*SPICFLLYTGKSL---NRIKQKISLLRISDV 595
           ++ Y    +NPFT C S   N   + IC +LY    L   N   +   LL++ D+
Sbjct: 22  ENGYQVYRSNPFTLCFSKKANG--ASICEMLYESSLLAFVNISPESTRLLKLVDI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,531
Number of Sequences: 5004
Number of extensions: 70871
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)