Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K03
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    33   0.035
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    29   0.99 
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   3.0  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   4.0  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    26   5.3  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   5.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   7.0  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 549 WVASTRRAAPGRPRSWSWPRIPVSSTRSPLSASGLPAW 662
           W      AAP  P  W  P  P S+    ++ S LP W
Sbjct: 426 WAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPW 463


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 LSLMRLVVVAAGFHRVRILGRQHQAGSSREAPVVVMAPHSSFFDA 628
           L   R+ VV+AG   +  +GR  +   ++  PVV + P  S F A
Sbjct: 183 LGRTRVAVVSAGVKSILDIGRTLEVLETQGVPVVTLGPPKSAFPA 227


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +2

Query: 119 CIRCVSXKXVC**VYHDLVQFKSSSNYS------SDKMNGKLHSETGAFSSDDMRAEILN 280
           C++ VS K V   +Y  L   K   + S      SD    K  SET  +SS+D    +L 
Sbjct: 643 CLQAVSWKQVTDLLYSHL-SLKEGQDDSLIQQIISDPETVKTLSET--YSSEDA-LHVLK 698

Query: 281 PFVHKLELDNTYDKIKTAIFTVILLPFRV 367
            FV +  + N Y+ I   I     + FR+
Sbjct: 699 FFVRERSITNKYEDILYKILEACFMQFRI 727


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 275 LNPFVHKLELDNTYDKIKTAIFTVILLPFRV 367
           L P + +L+L +   KI  AIF +ILL FR+
Sbjct: 207 LTPLLSRLQLIDKNIKIVGAIFGIILLLFRL 237


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 366 TRNGNKMTVKIAVFILSYVLSNSNLWTKGFNISARMSSDEKAPVS 232
           T +  K  VKIA  I     SNS++     ++S+  SSD ++  S
Sbjct: 156 TNSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTS 200


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 745 VVAPNIYGLCVVYQLSNERYTS 680
           +V    YGLC +Y+  N +Y S
Sbjct: 352 IVVGMFYGLCAIYETKNLQYVS 373


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 212  MNGKLHSETGAFSSDDMRAEILNPFVHKL-ELDNTYDKIKT 331
            +  KL+   G+FS ++MRA   N +  ++ +L++ Y K  T
Sbjct: 1068 VRSKLNDTAGSFSGEEMRAIDDNYYASRIKQLEDDYQKAIT 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,328
Number of Sequences: 5004
Number of extensions: 60741
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)