Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_K02
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0468 - 18484386-18486377,18486741-18486827                       29   1.2  
05_06_0055 + 25235844-25235872,25237026-25237932                       29   2.1  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   4.9  
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636...    27   4.9  
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194     27   4.9  
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151...    27   4.9  

>07_03_0468 - 18484386-18486377,18486741-18486827
          Length = 692

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 17  LHINLLNELFALRSAI*IKYFNNIKVQCRRPKTKLLHRRDLKNLYRNFH--HAKRLKQ 184
           L +N LN  +  R    + Y  N K+ C + K K +  +  KNLYRN +  H K  +Q
Sbjct: 618 LILNFLNAGYFARVMEVLSYMANRKMYCDKWKYKQVFLKLHKNLYRNLNLLHEKTEQQ 675


>05_06_0055 + 25235844-25235872,25237026-25237932
          Length = 311

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 346 SLKNNLGLLYKAKI--SLPTHHFHCHH 272
           SL N+LGLL  A +  +L  HH H HH
Sbjct: 188 SLSNSLGLLNAATMPATLAAHHHHHHH 214


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 123 NNFVFGRRHCTLILLKYFI*MALRNANSSFNKFMCNSIGR 4
           NN VFG  +    L  +   M L N NS  N F   +IGR
Sbjct: 467 NNMVFGGLNKQTALESHGCSMTLHNRNSEANHFSEQNIGR 506


>09_04_0281 -
           16360082-16361059,16361608-16361688,16363287-16363650,
           16363675-16364348
          Length = 698

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 LLHRRDLKNLYRNFHHAKRLKQI 187
           L H   LK LYR+  H K LKQ+
Sbjct: 591 LKHEGILKQLYRDLKHEKMLKQV 613


>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
          Length = 569

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 214 LFNRMNDAENSTASKTLQNGDDNESDEWED 303
           +  R  + E +TAS++    DD+ SDEW+D
Sbjct: 1   MVKRQREEEPATASQS--GDDDSNSDEWKD 28


>04_04_1049 +
           30414545-30414596,30414732-30414853,30415121-30415198,
           30415329-30415459,30415644-30417552,30417797-30417836,
           30418194-30418259,30418583-30418734
          Length = 849

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 319 YKAKISLPTHHFHCHHRFG 263
           +K K+    HH H HH FG
Sbjct: 548 FKEKLGTVFHHLHHHHHFG 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,894
Number of Sequences: 37544
Number of extensions: 116559
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)