Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J22
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.8  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    26   3.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   6.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   6.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   6.7  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    25   6.7  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   6.7  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.9  
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...    25   8.9  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 501 FYQSSRASLEYLLLPPRSAPTEAPSG 424
           FY   +A  ++ L PP+S+ TEA  G
Sbjct: 175 FYDWYKAGAQHNLAPPQSSHTEASQG 200


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 492 SSRASLEYLLLPPRSAPTEAPSGLTPRPFCALR-RARPTRYGLMIPN 355
           +SR+       PP+SAP++  S +   P  A + R R  R+G+   N
Sbjct: 199 NSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAERFGVAAKN 245


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 505 FFLSVLQGLAGVFATT 458
           FF+S+L  +AG+FA+T
Sbjct: 430 FFVSILSVIAGIFAST 445


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 34  FKWVRTPAYSNDEAGDL 84
           F  ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 464 YYHQDLHRRRLQAGSRPDPSALSVAHVLL 378
           Y  +DL RR+LQ  S+P  S  + A V++
Sbjct: 191 YKSEDLKRRKLQPSSKPLSSLEARAKVIM 219


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 168 FLGALTLRLVHPTAPVLLTKIGPLGTVIKISGFIVRVSRSSHPFKV 31
           FL       +  T P+L+T++ P  T ++ +  + R     HP KV
Sbjct: 193 FLNVREFAQLKGTLPILITELQPSLTPLQEADHVKRGLPLGHPLKV 238


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 180 SHERFLGALTLRLVHPTAPVLLTKIGPLGTVIKISGFIVR 61
           +HE +  AL + L +P  P++LT   PL  +  I  ++ R
Sbjct: 4   NHEVYKDALPISLAYPLPPIILT--NPLTWIPYIYRYLFR 41


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 165 LGALTLRLVHPTAPVLLTKIG 103
           +G   LR V+P +P+LLT  G
Sbjct: 323 IGHKELRFVYPISPILLTLAG 343


>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 398 RAQKGLGVSPLGASVGADLGGSSK 469
           + ++ LG+   G ++GA LGG  K
Sbjct: 124 KMERALGIKLRGQNIGAPLGGPKK 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,707
Number of Sequences: 5004
Number of extensions: 44924
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)