Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J22
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 30 1.3
01_01_0094 - 730484-731570,732030-732715 28 3.9
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 5.1
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 5.1
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 5.1
03_05_0543 - 25404630-25405408,25405461-25405605 28 5.1
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 6.8
04_03_0534 - 16845094-16845511,16846180-16846211 27 6.8
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 6.8
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 27 8.9
04_04_1575 + 34548774-34549109,34549979-34550185 27 8.9
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 27 8.9
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 489 SRASLEYLLLPPRSAP--TEAPSGLTPRPFCALRRARP 382
SR L LLLPP P +AP PRP+C RP
Sbjct: 380 SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 246 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 151
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 435 PPSVQILVVVANTPARPW 488
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 282 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 199
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 119 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 283
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -3
Query: 459 PPRSAPTEAPSGLTP---RPFCALRRARP 382
PPR AP AP+ LTP + F A RR P
Sbjct: 155 PPRRAPAPAPAPLTPALSQRFLAERRPAP 183
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 213 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 106
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>04_03_0534 - 16845094-16845511,16846180-16846211
Length = 149
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 136 SHSASSAYQNWPTWHRHQDLRLHRSSK 56
+H A WP H+H D R H+S +
Sbjct: 17 THPAYKETHLWPIRHKHTDWRAHKSGE 43
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 246 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 151
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 172 LMGHHERRWSLMTAGRWPWKSESAKEC 252
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 450 SAPTEAPSGLTPRPFCALRRAR 385
SAP+ SGL P PF + R AR
Sbjct: 3 SAPSTTASGLAPPPFSSARGAR 24
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 514 FFFFFLSVLQGLAGVFATTTKICTDG 437
FFFFF + L +T+T C DG
Sbjct: 10 FFFFFFILPASLTATASTSTSSCPDG 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,945
Number of Sequences: 37544
Number of extensions: 364809
Number of successful extensions: 1197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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