Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J22
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   6.0  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    27   6.0  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    27   6.0  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    27   8.0  
AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 113 PKLAHLAPSSRSPASSFE*AGVLTHLKFENRLR 15
           PK+A L+PS+ S +SS     +L   +FE +L+
Sbjct: 509 PKMASLSPSNSSDSSSSVRQDILESSEFEEKLK 541


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 214 GRWPWKSESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTCDAKFLI 357
           G W  K  +  + A THLP+    K++  + F         C++ F I
Sbjct: 393 GTWSSKQPNCTKVACTHLPEVANAKIEVPDRFLFGDVARVVCNSGFTI 440


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 113 PKLAHLAPSSRSPASSFE*AGVLTHLKFENRLR 15
           PK+A L+PS+ S +SS     +L   +FE +L+
Sbjct: 480 PKMASLSPSNSSDSSSSVRQDILESSEFEEKLK 512


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 113 PKLAHLAPSSRSPASSFE*AGVLTHLKFENRLR 15
           PK+A L+PS+ S +SS     +L   +FE +L+
Sbjct: 509 PKMASLSPSNSSDSSSSVRQDILESSEFEEKLK 541


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 459 PPRSAPTEAPSGLTPRPFCALRRARPTRYGLMIP 358
           PP   P   P    PRP C     RP+ Y   +P
Sbjct: 75  PPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSYVP 108


>AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical
           protein W05F2.4b protein.
          Length = 806

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 145 FGSSHSASSAYQNWPTWHRHQDLRLHRSSKPEFSPI 38
           F S+  + SA+Q    +HR   +R    S P+ SP+
Sbjct: 317 FDSARPSPSAFQQVSPFHRGSSMRSSLRSLPDHSPV 352


>AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical
           protein W05F2.4a protein.
          Length = 834

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 145 FGSSHSASSAYQNWPTWHRHQDLRLHRSSKPEFSPI 38
           F S+  + SA+Q    +HR   +R    S P+ SP+
Sbjct: 345 FDSARPSPSAFQQVSPFHRGSSMRSSLRSLPDHSPV 380


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 5/29 (17%)
 Frame = +1

Query: 19  NLFSNFKWVRTP--AYSNDEA---GDLDD 90
           +LFS+F+W RTP  A SN+E    GDL++
Sbjct: 56  SLFSSFRWKRTPERAPSNNELVEHGDLEN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,520
Number of Sequences: 27780
Number of extensions: 263023
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)