Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J22
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.81 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   10.0 

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 252 CNDSPAEATSPENGW 296
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 451 ICTDGGSKRAHAQTLLRSPSRTSYSLRLNDTKLKI*HH 338
           +C    S+       L SP R   + R+N TKLK  HH
Sbjct: 120 LCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKR-HH 156


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 311 AYTLPLPARVMLNF 352
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/37 (21%), Positives = 24/37 (64%)
 Frame = -1

Query: 395 VAHVLLVTA**YQIKNLASHVPVTVVYRQNASAPSIF 285
           + H+L ++   +Q+ + +++ P  ++Y +++ A S+F
Sbjct: 292 ICHILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVF 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,390
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)