Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J19
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    65   1e-11
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    28   1.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.4  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   5.9  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   7.8  

>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 40/146 (27%), Positives = 70/146 (47%)
 Frame = +1

Query: 340 NVNNWHWTEKNAGPWSKDRLKELFSDLKIAQNGIVCSITEVEKVDGEASANNRKGKLIFF 519
           N NNWHWT K+   WS +   +    ++ ++      IT+V   +G+   + RK K+I  
Sbjct: 7   NPNNWHWTSKDCRVWSHEYFNKELPKIQASEGPTSARITQVNSCEGDVDVSMRKRKVITI 66

Query: 520 YEWDIKLKWEGVLAGGSEKIKGEIHIPNLSEENDVSEVDMTVTIKSNGDEAQRVKAFMHH 699
           ++  I+++++G    G E   G I  P LS +   S+    + I S   E + +K     
Sbjct: 67  FDLKIQMEFKGETKDGVE-ATGSITCPELSYDLGYSDYVFDIDIYSASKEKEPIK----- 120

Query: 700 VGREEIRKQLQEYIRSLKEEFSKGLI 777
              E +R+++   IR L   FS+ L+
Sbjct: 121 ---ELVREKIIPQIRQLFSGFSQVLL 143


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -3

Query: 161 H*NAQQVITLSEDHKXYCSEILLFSR-----KXSQPSKRAVTELNNTVRLTDL 18
           H  A +++TL E  +    E  L SR     K    +K+ +++LNN V+ TD+
Sbjct: 52  HVEAVEMLTLCESAREMVDEFPLISRMSRIYKNCYATKQMISQLNNLVKETDV 104


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 840  KSTCDC*YIVRFNGRFTFLWQNEAF*ELFFKASNILLEL--FSDLF 709
            K TCDC Y + F G  TF +Q   F  ++    + LL+L  F +LF
Sbjct: 1124 KPTCDCVYDISF-GSLTFYFQKSYFNAIY----DFLLKLKRFQELF 1164


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 382 WSKDRLKELFSDLKIAQNGIV------CSITEVEKVDGEASANNRKGKLIFFYEWDIKLK 543
           +S D  K L  +  IA N  +      CSI  VEK+    +  +     I F+ WD+  +
Sbjct: 260 YSSDFKKRLLKNELIAHNDPMEIEMRGCSIWAVEKILQNINRKDVNAITIDFFLWDLAKE 319

Query: 544 WE 549
           W+
Sbjct: 320 WQ 321


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 577 IKGEIHIPNLSEENDVSEVDMTVTIKSNGDEAQRVKAFMHHVGREEIRKQLQEYIRSLKE 756
           ++  +   +LS++ + S VDM +            K  +      ++RK+ + Y +SL+ 
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLN------KPTIERERNLKLRKKSRFYKKSLRS 379

Query: 757 EFSKGLILP 783
            FS+GL  P
Sbjct: 380 RFSRGLHRP 388


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +1

Query: 535 KLKWEGVLAGGSEK-IKGEIHIPNLSEENDVSEVDMTVTIKSNGDEAQRVKAFMHHVGRE 711
           KL+ EG+L   S+K +  E   P+ S ++D + +     I  N D  QR++ F H    E
Sbjct: 488 KLRSEGLLGKKSKKKLLRESQKPS-SSDSDNASLTRIDKIFIN-DVYQRMQQFKHSAIEE 545

Query: 712 EIRKQLQEYIRSLKEEFSKGLILPKKGESS 801
                 ++Y+R L    +  L L  +   S
Sbjct: 546 ISLPPCRKYVRRLVHALANDLNLKSRSYGS 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,041
Number of Sequences: 5004
Number of extensions: 70928
Number of successful extensions: 223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)