Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J19
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.88 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 490 NNRKGKLIFFYEWDIKLKWEGVL 558
           NNR G+ +   E D KL  +G+L
Sbjct: 359 NNRAGRFLILTESDTKLSSQGIL 381


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -3

Query: 680 TLWASSPLLLIVTVMSTSLTSFSSDKFGM*ISPLIFSLPPANTPSHFNFMSHS*KNINFP 501
           T W+ S    +  +++  L   +S+   M   P ++S        H     H+ K  N P
Sbjct: 165 TRWSISGT--VFDLINIHLFHDASNFIAMETFPSVYSKTRRRALEHTLDRFHNDKYSNVP 222

Query: 500 FLLFADASPSTFSTSVI 450
           + LF D +  T +  VI
Sbjct: 223 YFLFGDFNFRTDTAGVI 239


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 340 NVNNWHWT 363
           NVNNW WT
Sbjct: 68  NVNNWLWT 75


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 141 YLLCVLMIFASYN 179
           Y+ C++M+F  YN
Sbjct: 353 YIPCIIMVFLYYN 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,555
Number of Sequences: 438
Number of extensions: 4926
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)