Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J16
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 41 2e-04
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 28 1.4
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 27 2.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 27 3.2
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.6
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 9.6
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 25 9.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 9.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 9.6
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Frame = +3
Query: 453 LTQFLCCSIFVFIFYLAYGYFLELIFAKP---EVKPVSLYITLVQFMITMLLSYGESWIR 623
+ Q C I ++ +L++ E I +P E ++L Q +T+L +W
Sbjct: 5 MRQLFVCMIGIYGSFLSWAVMQEKIITRPYDGERFSSPALLSLAQSFMTVLCGLLWNWFH 64
Query: 624 NPIKRKV--P--LKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIII 791
R + P L ++ +A + F ++ +L+YPT ++ KSCKL+PV+ + +
Sbjct: 65 GVSARGLLEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFV 124
Query: 792 MRXRY 806
+ ++
Sbjct: 125 YKRKF 129
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 412 SVFDVLLFSSSILMKVSFTEXXLSDDISITHHICLFLF*WXKTIYITSSYHXX*FFVF 239
+V+ + +F S +SF ++IT I L +Y+TSSYH F +F
Sbjct: 272 TVYQIGVFLSR--SSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFLIF 327
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 513 FLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRN 626
F +I + P+ +Y ++QF M SYG S RN
Sbjct: 450 FRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARN 487
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 240 SSGFNQKQKIYLFLNIKYLIIYVPFFM 160
+SGF+ K+Y FL+ K L+++ P F+
Sbjct: 791 NSGFDSALKLYDFLSNKVLVLFRPRFI 817
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +2
Query: 494 LFSLRILLGINICKTGSEASQFVYNLSAIYDYDVIELRRIMDKKSYQKESSTKNLCSFSC 673
L S+ I G IC+ S + + Y L Y Y+ ++ I KK + +T+N C
Sbjct: 213 LHSIMIQFGF-ICRQKSISKKIAYYL---YSYECFPMKEIDWKKKIVNDGATRNNFFIPC 268
Query: 674 I 676
I
Sbjct: 269 I 269
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 432 DITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLL 599
DI NY + C + +F+F + G F +++ A + + Y L +T LL
Sbjct: 354 DIVNYMSVDTQKVCDLTMFLFVIVSGPF-QIVLALTNLYHLVGYGALSGAFVTFLL 408
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 674 IDIRDNVIFEFSFKLFELSNSVDIQEL 754
ID++ IF F +KL EL N DI L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 408 TEINILCFDITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEV---KPVSLYI 566
T ++IL F + + S Q L S F+F L+ YFL +P++ +P++++I
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFRNNLSDRYFLAFGDVEPDMVASEPLNIHI 237
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 638 ESSTKNLCSFSCIDIRDNVIFEFSFK 715
E +NLC++ C+D + IF S K
Sbjct: 1040 EKIVRNLCAYVCMDTTETPIFHDSGK 1065
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 443 LQSINSVPVLFDIRFYILFSLRILLGINICKT 538
L+ + ++F Y +F+L LLGI CKT
Sbjct: 440 LRLFETYNLIFPCNQYWVFNLEFLLGIYQCKT 471
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 674 IDIRDNVIFEFSFKLFELSNSVDIQEL 754
ID++ IF F +KL EL N DI L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,517
Number of Sequences: 5004
Number of extensions: 61320
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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