Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J16
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97...    62   4e-10
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82...    47   2e-05
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207...    37   0.017
02_05_1321 - 35695474-35696161,35696315-35696547                       29   4.4  
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174...    28   7.6  
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251           28   7.6  

>03_01_0124 +
           971213-971341,971741-971769,971877-972078,972839-973081,
           973172-973273,973743-974180
          Length = 380

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
 Frame = +3

Query: 435 ITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLLSYGES 614
           +T+  +  QFL CS   F  YL  G   E ++ + +      Y T VQ  + + L   + 
Sbjct: 16  LTDRPRWQQFLICSSGFFFGYLVNGICEEYVYNRLQFS-FGWYFTFVQGFVYLGLIRLQG 74

Query: 615 WIRNPIKRKV-PLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIII 791
           +    +K+ V P +TY  L+A+ +G+   +  +L++LNYP Q++FKS K++PVMI    I
Sbjct: 75  FT---VKQMVNPWRTYVRLSAVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMIMGAFI 131

Query: 792 --MRXRY 806
             +R +Y
Sbjct: 132 PGLRRKY 138


>05_01_0119 +
           820566-820739,822708-822737,823153-823266,823341-823433,
           823521-823586,824076-824174,824480-824559,825039-825151,
           825600-825688,825955-826041,826128-826130,826285-826383
          Length = 348

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +3

Query: 645 PLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRXRY 806
           PL+ Y V++   + T +    AL Y+++P Q + K  K+IPVMI   IIMR +Y
Sbjct: 117 PLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTIIMRKKY 170


>06_03_0629 +
           22920206-22920291,22920430-22920527,22920657-22920796,
           22921596-22921626,22922025-22922128,22922439-22922560,
           22922651-22923050,22923245-22923268
          Length = 334

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 639 KVPLKTY-AVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRXRYS 809
           + PL+ Y  V    T+G  +    AL +++YP Q++ KS K+IPVM+   I+   +Y+
Sbjct: 76  RAPLRKYWGVSITNTVGP-AMGIEALKFISYPAQVLAKSSKMIPVMLMGTILYGVKYT 132


>02_05_1321 - 35695474-35696161,35696315-35696547
          Length = 306

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 125 ADMF*IFMLLSGIIFKIVNKC 63
           A +F IF+LLS  +FK VN C
Sbjct: 36  AQIFLIFLLLSSFVFKAVNDC 56


>11_06_0766 -
           27115441-27115760,27115878-27116025,27116213-27117417,
           27117510-27117753,27120181-27120357
          Length = 697

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 518 GINICKTGSEASQFVYNLSAIYDYDVIELRRIMDKKSYQKESSTKNLCSFSCIDIR 685
           G+ I K G+  +Q    LS  Y+    E R ++ +  +QK +    LC F  ID++
Sbjct: 37  GMEIVKAGNSNAQETGGLSLNYE----EARALLGRLEFQKGNVEAALCVFDGIDLQ 88


>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
          Length = 148

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 IDDENSRTSKTEINILCFDI--TNYSQLTQ 461
           IDD NS   +TE+ +  FDI    Y QL+Q
Sbjct: 96  IDDPNSILVRTELGVFMFDIELNEYEQLSQ 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,750
Number of Sequences: 37544
Number of extensions: 298927
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)