Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J16
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical pr...   126   1e-29
AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical...    60   1e-09
U00067-10|ABD94100.1|  247|Caenorhabditis elegans Hypothetical p...    59   4e-09
Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical pr...    37   0.015
AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosi...    33   0.32 
AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosi...    33   0.32 
AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosi...    33   0.32 

>U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical
           protein F54E7.1a protein.
          Length = 364

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/131 (46%), Positives = 83/131 (63%)
 Frame = +3

Query: 414 INILCFDITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITM 593
           I++L F+I    +  QF+  S+ +FI Y+ YGY  ELIF  P +KP    +TL+QF+I  
Sbjct: 26  IHLLGFNIARKPKWLQFVLLSLAIFILYIGYGYMQELIFKLPGMKPFGWTLTLIQFLIYS 85

Query: 594 LLSYGESWIRNPIKRKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVM 773
              Y E  I +  KR +P + Y V+A  T+ TM  SN ++ YLNYPTQ+IFK CKLIPV+
Sbjct: 86  GCGYTECIIWHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLIPVL 145

Query: 774 IGSIIIMRXRY 806
           IG I+I   RY
Sbjct: 146 IGGILIQGKRY 156


>AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical
           protein Y111B2A.20 protein.
          Length = 340

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
 Frame = +3

Query: 462 FLCCSIFVFIFYLAYGYFLE-LIFAKPEVKPVSLY-ITLVQFMITMLLSYGESW---IRN 626
           FL C+  + I Y  +G   E ++  K E+   S+   T  Q ++  L +    +   IR 
Sbjct: 24  FLICAGGILICYFVFGIQQERIVQGKYELPDESIEKFTFTQALVFFLCTANTIYAFLIRK 83

Query: 627 PIK-RKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRXR 803
             +   VP K YA  AA  L  M  SN AL YL YPTQ++ KSCK IPVMI  ++     
Sbjct: 84  KTEIDNVPTKMYAASAASYLLAMVASNQALQYLPYPTQVLAKSCKPIPVMIFGVLFAHKS 143

Query: 804 Y 806
           Y
Sbjct: 144 Y 144


>U00067-10|ABD94100.1|  247|Caenorhabditis elegans Hypothetical
           protein F54E7.1b protein.
          Length = 247

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +3

Query: 690 MSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIIIMRXRY 806
           M  SN ++ YLNYPTQ+IFK CKLIPV+IG I+I   RY
Sbjct: 1   MGLSNASVGYLNYPTQVIFKCCKLIPVLIGGILIQGKRY 39


>Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical
           protein C53B4.6 protein.
          Length = 318

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 630 IKRKVPLKTYAVLAALTLGTMSFSNLALSY-LNYPTQLIFKSCKLIPVMIGSIIIMRXRY 806
           +  ++P+K+YA + A+       +NLAL + + +P  +IFKS  L+  M    II   +Y
Sbjct: 56  VPNRIPIKSYAKIVAIFFTVNMTNNLALKFAIYFPLFIIFKSGTLLTNMTMGWIIRNYQY 115

Query: 807 S 809
           S
Sbjct: 116 S 116


>AF016441-6|AAX55687.1|  440|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform b protein.
          Length = 440

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +3

Query: 558 LYITLVQFMITMLLSYGESWIRNPIKRKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQ 737
           ++   +  ++  L+   + W + P     PL  ++  +     +      AL Y+++PTQ
Sbjct: 166 IFCNRIVALVLSLMILAKDWTKQP-PHVPPLYVHSYTSFSNTISSWCQYEALKYVSFPTQ 224

Query: 738 LIFKSCKLIPVMIGSIIIMRXRYS 809
            I K+ K++  M+   ++   RYS
Sbjct: 225 TICKASKVVVTMLMGRLVRGQRYS 248


>AF016441-5|AAX55688.1|  408|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform c protein.
          Length = 408

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +3

Query: 558 LYITLVQFMITMLLSYGESWIRNPIKRKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQ 737
           ++   +  ++  L+   + W + P     PL  ++  +     +      AL Y+++PTQ
Sbjct: 166 IFCNRIVALVLSLMILAKDWTKQP-PHVPPLYVHSYTSFSNTISSWCQYEALKYVSFPTQ 224

Query: 738 LIFKSCKLIPVMIGSIIIMRXRYS 809
            I K+ K++  M+   ++   RYS
Sbjct: 225 TICKASKVVVTMLMGRLVRGQRYS 248


>AF016441-4|AAX55686.1|  425|Caenorhabditis elegans Paps (adenosine
           3'-phosphate 5'-phosphosulfate) transporter protein 1,
           isoform a protein.
          Length = 425

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +3

Query: 558 LYITLVQFMITMLLSYGESWIRNPIKRKVPLKTYAVLAALTLGTMSFSNLALSYLNYPTQ 737
           ++   +  ++  L+   + W + P     PL  ++  +     +      AL Y+++PTQ
Sbjct: 151 IFCNRIVALVLSLMILAKDWTKQP-PHVPPLYVHSYTSFSNTISSWCQYEALKYVSFPTQ 209

Query: 738 LIFKSCKLIPVMIGSIIIMRXRYS 809
            I K+ K++  M+   ++   RYS
Sbjct: 210 TICKASKVVVTMLMGRLVRGQRYS 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,166
Number of Sequences: 27780
Number of extensions: 333097
Number of successful extensions: 790
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)