Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J12
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 418 LFFPNHHIWLVQAL 377
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 418 LFFPNHHIWLVQAL 377
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 145 NNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 273
           N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 37  NSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 145 NNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 273
           N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 37  NSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,258
Number of Sequences: 438
Number of extensions: 4053
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)