Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J11
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 63 4e-11
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 42 6e-05
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 38 0.001
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.59
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 28 1.4
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 28 1.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 27 1.8
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 2.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.2
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 26 4.2
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 26 4.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 4.2
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 26 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.5
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 5.5
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.3
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 7.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.7
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 25 9.7
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 9.7
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = +2
Query: 518 QLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNY 646
Q+V+GPPG+GK+TYC M +L +GR IIVNLDPAND + Y
Sbjct: 5 QVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKY 47
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 6e-05
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
V G +GK+T+C + +K++GR +VNLDPA + ++P D
Sbjct: 8 VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVD 53
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 476 MTNKRFKPTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPD 655
MT+K KP +V+G G+GKTT+ +++ L + + I+NLDPA + Y+ +
Sbjct: 1 MTDKEKKPCAI----IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEAN 56
Query: 656 XD 661
D
Sbjct: 57 ID 58
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 72 IMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIVIAECSDK 188
+ KN K +P N F +++ ++DD++ D +E S+K
Sbjct: 110 VRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEK 148
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 625
+V GP G+GK+++ +++ L R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 515 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 616
G L+ GPPG GKT ++ ML R+ IVN
Sbjct: 306 GILLYGPPGTGKTLIARQIGKMLN--AREPKIVN 337
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = +3
Query: 27 CDKLE*QAIRMDLPDIMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIVIAECSDKVFLVVS 206
CD + + +DL ++NL +Q +P N + ++ V+T + + V+L +
Sbjct: 637 CDDATVRVLSLDLYTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYL-RT 695
Query: 207 QYQKMGSMLMVVRDRINGPHGIE 275
L+ R R GP ++
Sbjct: 696 VIDVTSGQLLDTRTRFLGPRAVK 718
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 515 GQLVLGPPGAGKTTYCMKMSDML 583
G L+ GPPG+GKT++ ++ L
Sbjct: 244 GYLLYGPPGSGKTSFLYALAGEL 266
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 476 MTNKRFKPTQTFYGQL--VLGPPGAGKTTYCMKMSDML 583
MT PT Y + V+GP G+GKTT +S+ L
Sbjct: 1 MTVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKL 38
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPAND 634
G G GKTT ++ + + V++++ DPA++
Sbjct: 26 GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHN 60
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSD 577
VLG PGAGK T C ++++
Sbjct: 7 VLGGPGAGKGTQCDRLAE 24
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 188 SVFSCISVSKNGKY-ANGCQRS 250
SV C+ S NGKY A GC ++
Sbjct: 314 SVVCCVKFSNNGKYLATGCNQA 335
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 503 QTFYGQLV--LGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 625
++ YG V +GP GKT+ + R I VNLDP
Sbjct: 102 ESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 503 QTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMN----YKP 652
QT L++G G GKTT ++ + LG++V ++N+ ++ + YKP
Sbjct: 465 QTNEPLLLVGETGTGKTTTIQLLAGL---LGQKVTVINMSQQTESSDMLGGYKP 515
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 464 RMSAMTNKRFKPTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLD 622
++ A T K+ +P+ +++G G+GKTT C K++ + G + +V D
Sbjct: 90 KVDAFTPKKGRPSVI----MMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD 138
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 147 DVTTDIVIAECSDKVFLVVSQYQKMGSMLMVVRDRINGPHGIEDVYSTKV 296
DVTT+ ++ CSD L +++ + + +RD + +ED T V
Sbjct: 293 DVTTEEILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKKVEDEQKTVV 342
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 419 ESL*RYHFGLQKRRYRMSAMTNKRFKPTQTFYGQLV--LGPPGAGKTT 556
E L R H+GL+ + R+ + K T G+++ +GPPG GKT+
Sbjct: 540 EVLDRDHYGLKDVKDRVLELVAVG-KLRGTMQGKIMCLVGPPGVGKTS 586
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 515 GQLVLGPPGAGKT 553
G L+ GPPG GKT
Sbjct: 494 GMLLFGPPGTGKT 506
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 515 GQLVLGPPGAGKT 553
G L+ GPPG GKT
Sbjct: 414 GMLLFGPPGTGKT 426
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNL 619
L+ GPPG GKT + M + T Q + N+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNV 1322
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVII 610
L+ GPPG GKT +++ L +++++
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLVLRNKRILV 258
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 485 YLSLLTFCIFFFEVQNDISTSFQCFN 408
Y SL+ CIFF S QCF+
Sbjct: 38 YASLILLCIFFTIFSTMSHPSLQCFS 63
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 51 IRMDLPDIMKNLKIQNSEAPNNLFKSVSAEIDDVTTD 161
+ ++LP K K+ NL S+ +EID + D
Sbjct: 79 LELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECD 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,845
Number of Sequences: 5004
Number of extensions: 50828
Number of successful extensions: 206
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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