Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J11
(661 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008634-1|AAH08634.1| 310|Homo sapiens ATP binding domain 1 fa... 73 9e-13
BC007815-1|AAH07815.1| 310|Homo sapiens ATP binding domain 1 fa... 73 9e-13
AY358864-1|AAQ89223.1| 310|Homo sapiens AGAA5828 protein. 73 9e-13
AL034380-4|CAB92117.1| 310|Homo sapiens novel protein protein. 73 9e-13
AK022535-1|BAB14084.1| 310|Homo sapiens protein ( Homo sapiens ... 73 9e-13
AL034380-3|CAI21619.1| 172|Homo sapiens novel protein protein. 73 1e-12
AY364261-1|AAQ76820.1| 310|Homo sapiens hypothetical protein pr... 72 2e-12
AK001211-1|BAA91556.1| 310|Homo sapiens protein ( Homo sapiens ... 72 2e-12
BC008416-1|AAH08416.1| 284|Homo sapiens ATP binding domain 1 fa... 56 1e-07
AY359078-1|AAQ89437.1| 284|Homo sapiens PRYA1876 protein. 56 1e-07
AK223209-1|BAD96929.1| 284|Homo sapiens protein x 0004 variant ... 56 1e-07
BC031024-1|AAH31024.1| 284|Homo sapiens ATP binding domain 1 fa... 56 1e-07
AY364262-1|AAQ76821.1| 284|Homo sapiens protein x 0004 protein. 46 2e-04
AF117229-1|AAF17210.1| 284|Homo sapiens protein x 0004 protein. 46 2e-04
BX537973-1|CAD97937.1| 314|Homo sapiens hypothetical protein pr... 44 4e-04
BC007451-1|AAH07451.1| 374|Homo sapiens XPA binding protein 1, ... 38 0.042
AJ010842-1|CAA09376.1| 358|Homo sapiens ATP(GTP)-binding protei... 38 0.042
AC074091-4|AAX93201.1| 374|Homo sapiens unknown protein. 38 0.042
AB044661-1|BAB17612.1| 374|Homo sapiens XPA binding protein 1 p... 38 0.042
BC101181-1|AAI01182.1| 424|Homo sapiens MMAA protein protein. 34 0.39
BC101179-1|AAI01180.1| 418|Homo sapiens methylmalonic aciduria ... 34 0.39
BC101178-1|AAI01179.1| 418|Homo sapiens methylmalonic aciduria ... 34 0.39
AF524846-1|AAN77287.1| 418|Homo sapiens methylmalonic aciduria ... 34 0.39
BC005102-1|AAH05102.1| 190|Homo sapiens chromosome 1 open readi... 31 2.8
AL122003-5|CAI22244.1| 190|Homo sapiens chromosome 1 open readi... 31 2.8
AL122003-4|CAI22243.1| 228|Homo sapiens chromosome 1 open readi... 31 2.8
AF416713-1|AAL16807.1| 190|Homo sapiens unknown protein. 31 2.8
Y15571-1|CAA75680.1| 350|Homo sapiens R51H2 protein. 31 4.8
U92074-1|AAB63358.1| 350|Homo sapiens RecA-like protein protein. 31 4.8
U84138-1|AAC39723.1| 350|Homo sapiens DNA repair protein RAD51B... 31 4.8
DQ160197-1|AAZ85144.1| 350|Homo sapiens RAD51-like 1 (S. cerevi... 31 4.8
CR536560-1|CAG38797.1| 350|Homo sapiens RAD51L1 protein. 31 4.8
BC030219-1|AAH30219.1| 384|Homo sapiens RAD51-like 1 (S. cerevi... 31 4.8
BC063607-1|AAH63607.1| 586|Homo sapiens ATAD3A protein protein. 30 6.4
BC033109-1|AAH33109.1| 586|Homo sapiens ATAD3A protein protein. 30 6.4
BC014101-1|AAH14101.1| 586|Homo sapiens ATAD3A protein protein. 30 6.4
BC011814-1|AAH11814.1| 586|Homo sapiens ATAD3A protein protein. 30 6.4
BC007803-1|AAH07803.1| 586|Homo sapiens ATAD3A protein protein. 30 6.4
AL645728-11|CAI22954.1| 634|Homo sapiens ATPase family, AAA dom... 30 6.4
AL645728-10|CAI22955.1| 586|Homo sapiens ATPase family, AAA dom... 30 6.4
AL645728-9|CAI22953.1| 571|Homo sapiens ATPase family, AAA doma... 30 6.4
AL391244-1|CAI22656.1| 473|Homo sapiens ATPase family, AAA doma... 30 6.4
AL157945-1|CAI22067.1| 473|Homo sapiens ATPase family, AAA doma... 30 6.4
AK091144-1|BAC03595.1| 634|Homo sapiens protein ( Homo sapiens ... 30 6.4
AK001571-1|BAA91764.1| 586|Homo sapiens protein ( Homo sapiens ... 30 6.4
BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C (a... 30 8.4
BC018701-1|AAH18701.1| 648|Homo sapiens ATPase family, AAA doma... 30 8.4
BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C (a... 30 8.4
BC002542-1|AAH02542.1| 648|Homo sapiens ATPase family, AAA doma... 30 8.4
AL157945-2|CAI22068.1| 648|Homo sapiens ATPase family, AAA doma... 30 8.4
AK024028-1|BAB14787.1| 480|Homo sapiens protein ( Homo sapiens ... 30 8.4
AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C (a... 30 8.4
AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein. 30 8.4
AB033099-1|BAA86587.1| 606|Homo sapiens KIAA1273 protein protein. 30 8.4
>BC008634-1|AAH08634.1| 310|Homo sapiens ATP binding domain 1
family, member B protein.
Length = 310
Score = 72.9 bits (171), Expect = 9e-13
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>BC007815-1|AAH07815.1| 310|Homo sapiens ATP binding domain 1
family, member B protein.
Length = 310
Score = 72.9 bits (171), Expect = 9e-13
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>AY358864-1|AAQ89223.1| 310|Homo sapiens AGAA5828 protein.
Length = 310
Score = 72.9 bits (171), Expect = 9e-13
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>AL034380-4|CAB92117.1| 310|Homo sapiens novel protein protein.
Length = 310
Score = 72.9 bits (171), Expect = 9e-13
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>AK022535-1|BAB14084.1| 310|Homo sapiens protein ( Homo sapiens
cDNA FLJ12473 fis, clone NT2RM1000924, weakly similar to
HYPOTHETICAL 39.7 KD PROTEIN C34E10.2 IN CHROMOSOME III.
).
Length = 310
Score = 72.9 bits (171), Expect = 9e-13
Identities = 31/51 (60%), Positives = 42/51 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>AL034380-3|CAI21619.1| 172|Homo sapiens novel protein protein.
Length = 172
Score = 72.5 bits (170), Expect = 1e-12
Identities = 31/50 (62%), Positives = 41/50 (82%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNY 646
PT T +GQ V+GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y
Sbjct: 6 PT-TAFGQAVIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPY 54
>AY364261-1|AAQ76820.1| 310|Homo sapiens hypothetical protein
protein.
Length = 310
Score = 71.7 bits (168), Expect = 2e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVTGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>AK001211-1|BAA91556.1| 310|Homo sapiens protein ( Homo sapiens
cDNA FLJ10349 fis, clone NT2RM2001100. ).
Length = 310
Score = 71.7 bits (168), Expect = 2e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +2
Query: 497 PTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYK 649
PT T +GQ V GPPG+GKTTYC+ MS+ L+ LGR+V +VNLDPAN+ + Y+
Sbjct: 6 PT-TAFGQAVTGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYE 55
>BC008416-1|AAH08416.1| 284|Homo sapiens ATP binding domain 1
family, member C protein.
Length = 284
Score = 56.0 bits (129), Expect = 1e-07
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y QLV+GP G+GK+TYC M + L R V +VNLDPA + NY D
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 53
>AY359078-1|AAQ89437.1| 284|Homo sapiens PRYA1876 protein.
Length = 284
Score = 56.0 bits (129), Expect = 1e-07
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y QLV+GP G+GK+TYC M + L R V +VNLDPA + NY D
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 53
>AK223209-1|BAD96929.1| 284|Homo sapiens protein x 0004 variant
protein.
Length = 284
Score = 56.0 bits (129), Expect = 1e-07
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y QLV+GP G+GK+TYC M + L R V +VNLDPA + NY D
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 53
>BC031024-1|AAH31024.1| 284|Homo sapiens ATP binding domain 1
family, member C protein.
Length = 284
Score = 55.6 bits (128), Expect = 1e-07
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNY 646
Y QLV+GP G+GK+TYC M + L R V +VNLDPA + NY
Sbjct: 4 YAQLVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNY 48
>AY364262-1|AAQ76821.1| 284|Homo sapiens protein x 0004 protein.
Length = 284
Score = 45.6 bits (103), Expect = 2e-04
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y V+GP A ++TYC M + L R V +VNLDPA + NY D
Sbjct: 4 YAHCVMGPAHAKRSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 53
>AF117229-1|AAF17210.1| 284|Homo sapiens protein x 0004 protein.
Length = 284
Score = 45.6 bits (103), Expect = 2e-04
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = +2
Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y V+GP A ++TYC M + L R V +VNLDPA + NY D
Sbjct: 4 YAHCVMGPAHAKRSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 53
>BX537973-1|CAD97937.1| 314|Homo sapiens hypothetical protein
protein.
Length = 314
Score = 44.4 bits (100), Expect = 4e-04
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = +2
Query: 512 YGQLVLGPPGAGK----------TTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
Y QLV+GP G+GK +TYC M + L R V +VNLDPA + NY D
Sbjct: 24 YAQLVMGPAGSGKVRICGDKERKSTYCATMVQHCEALNRSVQVVNLDPAAEHFNYSVMAD 83
>BC007451-1|AAH07451.1| 374|Homo sapiens XPA binding protein 1,
GTPase protein.
Length = 374
Score = 37.5 bits (83), Expect = 0.042
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
LVLG G+GKTT+ +++ L G ++NLDPA + + + D
Sbjct: 23 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANID 69
>AJ010842-1|CAA09376.1| 358|Homo sapiens ATP(GTP)-binding protein
protein.
Length = 358
Score = 37.5 bits (83), Expect = 0.042
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
LVLG G+GKTT+ +++ L G ++NLDPA + + + D
Sbjct: 7 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANID 53
>AC074091-4|AAX93201.1| 374|Homo sapiens unknown protein.
Length = 374
Score = 37.5 bits (83), Expect = 0.042
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
LVLG G+GKTT+ +++ L G ++NLDPA + + + D
Sbjct: 23 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANID 69
>AB044661-1|BAB17612.1| 374|Homo sapiens XPA binding protein 1
protein.
Length = 374
Score = 37.5 bits (83), Expect = 0.042
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
LVLG G+GKTT+ +++ L G ++NLDPA + + + D
Sbjct: 23 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANID 69
>BC101181-1|AAI01182.1| 424|Homo sapiens MMAA protein protein.
Length = 424
Score = 34.3 bits (75), Expect = 0.39
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDT 637
GPPGAGK+T+ ML G ++ ++ +DP++ T
Sbjct: 150 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 185
>BC101179-1|AAI01180.1| 418|Homo sapiens methylmalonic aciduria
(cobalamin deficiency) cblA type protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.39
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDT 637
GPPGAGK+T+ ML G ++ ++ +DP++ T
Sbjct: 150 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 185
>BC101178-1|AAI01179.1| 418|Homo sapiens methylmalonic aciduria
(cobalamin deficiency) cblA type protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.39
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDT 637
GPPGAGK+T+ ML G ++ ++ +DP++ T
Sbjct: 150 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 185
>AF524846-1|AAN77287.1| 418|Homo sapiens methylmalonic aciduria
type A protein.
Length = 418
Score = 34.3 bits (75), Expect = 0.39
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDT 637
GPPGAGK+T+ ML G ++ ++ +DP++ T
Sbjct: 150 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 185
>BC005102-1|AAH05102.1| 190|Homo sapiens chromosome 1 open reading
frame 57 protein.
Length = 190
Score = 31.5 bits (68), Expect = 2.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLG 595
GPPG GKTT K S++LK+ G
Sbjct: 9 GPPGVGKTTLIHKASEVLKSSG 30
>AL122003-5|CAI22244.1| 190|Homo sapiens chromosome 1 open reading
frame 57 protein.
Length = 190
Score = 31.5 bits (68), Expect = 2.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLG 595
GPPG GKTT K S++LK+ G
Sbjct: 9 GPPGVGKTTLIHKASEVLKSSG 30
>AL122003-4|CAI22243.1| 228|Homo sapiens chromosome 1 open reading
frame 57 protein.
Length = 228
Score = 31.5 bits (68), Expect = 2.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLG 595
GPPG GKTT K S++LK+ G
Sbjct: 9 GPPGVGKTTLIHKASEVLKSSG 30
>AF416713-1|AAL16807.1| 190|Homo sapiens unknown protein.
Length = 190
Score = 31.5 bits (68), Expect = 2.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 530 GPPGAGKTTYCMKMSDMLKTLG 595
GPPG GKTT K S++LK+ G
Sbjct: 9 GPPGVGKTTLIHKASEVLKSSG 30
>Y15571-1|CAA75680.1| 350|Homo sapiens R51H2 protein.
Length = 350
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>U92074-1|AAB63358.1| 350|Homo sapiens RecA-like protein protein.
Length = 350
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>U84138-1|AAC39723.1| 350|Homo sapiens DNA repair protein RAD51B
protein.
Length = 350
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>DQ160197-1|AAZ85144.1| 350|Homo sapiens RAD51-like 1 (S.
cerevisiae) protein.
Length = 350
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>CR536560-1|CAG38797.1| 350|Homo sapiens RAD51L1 protein.
Length = 350
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>BC030219-1|AAH30219.1| 384|Homo sapiens RAD51-like 1 (S.
cerevisiae) protein.
Length = 384
Score = 30.7 bits (66), Expect = 4.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 524 VLGPPGAGKTTYCMKMSDMLKTL 592
+ GPPG GKT +C+ MS +L TL
Sbjct: 106 ITGPPGCGKTQFCIMMS-ILATL 127
>BC063607-1|AAH63607.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>BC033109-1|AAH33109.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>BC014101-1|AAH14101.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>BC011814-1|AAH11814.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>BC007803-1|AAH07803.1| 586|Homo sapiens ATAD3A protein protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>AL645728-11|CAI22954.1| 634|Homo sapiens ATPase family, AAA domain
containing 3A protein.
Length = 634
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 375 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 414
>AL645728-10|CAI22955.1| 586|Homo sapiens ATPase family, AAA domain
containing 3A protein.
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>AL645728-9|CAI22953.1| 571|Homo sapiens ATPase family, AAA domain
containing 3A protein.
Length = 571
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 312 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 351
>AL391244-1|CAI22656.1| 473|Homo sapiens ATPase family, AAA domain
containing 3C protein.
Length = 473
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 152 RVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLA 191
>AL157945-1|CAI22067.1| 473|Homo sapiens ATPase family, AAA domain
containing 3C protein.
Length = 473
Score = 30.3 bits (65), Expect = 6.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 152 RVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLA 191
>AK091144-1|BAC03595.1| 634|Homo sapiens protein ( Homo sapiens
cDNA FLJ33825 fis, clone CTONG2003375, moderately
similar to Drosophila melanogaster AAA family protein
Bor (bor) mRNA. ).
Length = 634
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 375 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 414
>AK001571-1|BAA91764.1| 586|Homo sapiens protein ( Homo sapiens
cDNA FLJ10709 fis, clone NT2RP3000869. ).
Length = 586
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K ++ Y +++ GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLA 366
>BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTM 640
++ GPPG GKTT + ++ L + ++ L+ +ND+M
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDSM 112
>BC018701-1|AAH18701.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLA 366
>BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTM 640
++ GPPG GKTT + ++ L + ++ L+ +ND+M
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDSM 112
>BC002542-1|AAH02542.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLA 366
>AL157945-2|CAI22068.1| 648|Homo sapiens ATPase family, AAA domain
containing 3B protein.
Length = 648
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 327 RVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLA 366
>AK024028-1|BAB14787.1| 480|Homo sapiens protein ( Homo sapiens
cDNA FLJ13966 fis, clone Y79AA1001394, weakly similar to
CELL DIVISION PROTEIN FTSH HOMOLOG (EC 3.4.24.-). ).
Length = 480
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 159 RVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLA 198
>AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C
(activator 1) 2 (40kD) protein.
Length = 320
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTM 640
++ GPPG GKTT + ++ L + ++ L+ +ND+M
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDSM 112
>AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein.
Length = 320
Score = 29.9 bits (64), Expect = 8.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTM 640
++ GPPG GKTT + ++ L + ++ L+ +ND+M
Sbjct: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDSM 112
>AB033099-1|BAA86587.1| 606|Homo sapiens KIAA1273 protein protein.
Length = 606
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 458 RYRMSAMTNKRFKPTQTFYGQLVL-GPPGAGKTTYCMKMS 574
R R A+ + K + Y ++L GPPG GKT + K++
Sbjct: 285 RVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLA 324
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,705,069
Number of Sequences: 237096
Number of extensions: 1698426
Number of successful extensions: 3748
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3747
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -