Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J11
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical...    53   2e-07
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    36   0.019
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      36   0.019
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U00042-1|AAA50674.1|  456|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical...    29   2.2  
Z92827-3|CAB07328.1|  191|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    29   3.9  
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    29   3.9  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...    28   5.1  

>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = +2

Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPD 655
           YG LV+G PGAGK+T+C  ++D+     R  + +NLDPANDTM Y PD
Sbjct: 2   YGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPD 49


>AL033514-15|CAA22102.1|  272|Caenorhabditis elegans Hypothetical
           protein Y75B8A.14 protein.
          Length = 272

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +2

Query: 512 YGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNY 646
           Y QLV+GP G+GK+TYC  M +   + GR + +VNLDPA +  NY
Sbjct: 3   YAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNY 47


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
           LVLG  G+GKTT+  +++  L        ++NLDPA   + Y  + D
Sbjct: 34  LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVD 80


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 521 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDXD 661
           LVLG  G+GKTT+  +++  L        ++NLDPA   + Y  + D
Sbjct: 34  LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVD 80


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 521 LVLGPPGAGKTTYCMKMSDMLK 586
           LVLGPP AGKTT C  ++D ++
Sbjct: 32  LVLGPPKAGKTTLCTFLADFME 53


>Z69302-1|CAA93264.1|  191|Caenorhabditis elegans Hypothetical
           protein F40F8.1 protein.
          Length = 191

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 524 VLGPPGAGKTTYCMKMSDML 583
           VLGPPG+GK T C K+ + L
Sbjct: 7   VLGPPGSGKGTICAKIQENL 26


>U00042-1|AAA50674.1|  456|Caenorhabditis elegans Hypothetical
           protein T04A6.3 protein.
          Length = 456

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 276 DVYSTKVVFGDSGEEHQAAARFLAETVDILSKPLCIFINLR 398
           DV +    +G+ G+EH A     A +V IL + LC   N R
Sbjct: 185 DVRNESYGYGNQGKEHSARGPACASSVSILCRKLCQDTNSR 225


>Z83239-3|CAB05810.1|  344|Caenorhabditis elegans Hypothetical
           protein T09F5.3 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 237 PLAYFPFFDTEIQLKTLYHYILLSLY 160
           P+   P FDTE+ ++T   Y+LL++Y
Sbjct: 264 PILMGPLFDTEMSIRTGLIYVLLNIY 289


>AF022971-11|AAZ32813.1|  265|Caenorhabditis elegans Hypothetical
           protein C31B8.16 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -3

Query: 590 MFLACQTFSYNMWFSQLQEDQGLIDHRRFVLV*IFYLSLLTFCIFFFEVQNDISTSFQCF 411
           M++A + +  N  F       G++ H R +      L L  FC F  E + D+S      
Sbjct: 174 MYMAKEIYKQNKEFID-----GIMYHTRIISAVYCVLPLSVFCQFLIEEETDVSVPISIA 228

Query: 410 NVI 402
           NVI
Sbjct: 229 NVI 231


>Z92827-3|CAB07328.1|  191|Caenorhabditis elegans Hypothetical
           protein C29F7.3 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 524 VLGPPGAGKTTYCMKMSDML 583
           VLGPPG+GK T C ++ + L
Sbjct: 7   VLGPPGSGKGTICTQIHENL 26


>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 494 KPTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQV--IIVNLDPAN 631
           K T T     V G PG GKT   M+   +LK+LG+ V   IVN    N
Sbjct: 190 KETNTSLSIYVSGQPGTGKTATTMR---VLKSLGKSVRSCIVNCASTN 234


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 60  DLPDIMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIV 167
           D  DI+KNL+ Q +E  N+  ++   E++++   I+
Sbjct: 574 DFRDILKNLEDQKTEVQNSEVQNKDKEVNEINNKII 609


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +3

Query: 261 PHGIEDVYSTKVVFGDSGEEHQAAARFLAETVDILSKPLCIFINLRSYDIETLKACRDII 440
           P+G+  +YS +V++G    E +       + +D++ K L + +  R  DI T +   +I+
Sbjct: 448 PNGVTVLYSVRVIYGIFRVEKEIFVPG-KQYLDLVKKDLMLVMERR--DIVTERFIHEIV 504

Query: 441 LDFKKED 461
            D K ED
Sbjct: 505 DDDKDED 511


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 515 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 616
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 332 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 363


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 515 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 616
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 332 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 363


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 515 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 616
           G L+ GPPG GKT    ++  ML    R+  IVN
Sbjct: 266 GILLFGPPGTGKTLMARQIGKMLN--AREPKIVN 297


>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 530 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPAND 634
           G  G GKTT    ++  L  +  +V++++ DPA++
Sbjct: 25  GKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,141
Number of Sequences: 27780
Number of extensions: 284890
Number of successful extensions: 833
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)