Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J10
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    29   0.72 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.2  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    27   3.9  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   3.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   6.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   8.9  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 216 WKPEPEYIQKPDNLLLPENISSL-WKWL----KFFGPKKNLIDSVTAHKENHQK 362
           WK E E +    NL +P+N+SSL + W     + F  + +LID +  ++   +K
Sbjct: 270 WKSEHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKK 323


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 513 WSPDCSFVVLAYGNGVVGFFDLTASNLFNIPIECSRPEGLECSDNTHAV 659
           ++P C    L   N ++G F  T  N+++I  EC   E L C   T A+
Sbjct: 811 FTPVCIGASLYCNNAMIGPFTKTGLNIYDIREECRDQEHL-CYPETGAI 858


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 441 SDYATIAARTTVNRDPYSQWRKLVWSPDCSFVVLAYGNGVVGFFDL 578
           +D  +++A    +   Y    K  WS D SF+ +  GNG+V  +D+
Sbjct: 207 ADSGSVSALAETDESTYVASVK--WSHDGSFLSVGLGNGLVDIYDV 250


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 201 YVYSEWKPEPEYIQKPDNLLLPENISSLWKW 293
           +  S W   P  ++KP N +L E  +  WK+
Sbjct: 92  FYMSGWHIRPRGVKKPLNPILGETFTGFWKF 122


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 369 YATFGGFLYEQLHCLLNSSWVQKI*ATSIKMICFLVVVSYQVFE 238
           Y T    +Y  L+C+L S    K+    I  + +L  + +++FE
Sbjct: 801 YFTKESHIYTLLNCILESGLPMKLPRNQIPELDYLTQICFELFE 844


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 208 IRNGNLNQNIFKNLITYYYQKTYHL 282
           I NG LN+N+  ++I   ++  +HL
Sbjct: 574 IENGQLNRNVLVHMILTQFRDVFHL 598


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 643 SEHSKPSGLEHSIGILKRFEAVKSKKPTTPFPYARTTKEQS 521
           S H  P+ +++S  + K   + + + PT+P  +A T  + S
Sbjct: 52  SNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSS 92


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 51  SFSELIGT*NYFLKLTKINEVI 116
           SF+ LIGT NYF+   K + V+
Sbjct: 311 SFANLIGTNNYFMTDVKSSSVV 332


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 436 FVLISNILSVNTAMTFPSSPRAICHFWW 353
           F++ +N+ +   A    S+P A   FWW
Sbjct: 86  FIIFTNLGTSKKAKDLKSNPYASLSFWW 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,470
Number of Sequences: 5004
Number of extensions: 68359
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)