Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J07
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical ...    89   2e-18
Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    29   2.7  
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.1  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    28   6.1  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.1  
M37235-1|AAA28122.1|  273|Caenorhabditis elegans myosin II protein.    28   6.1  
AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical...    28   6.1  
Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    27   8.1  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    27   8.1  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    27   8.1  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    27   8.1  

>AF000263-4|AAG00016.1|  159|Caenorhabditis elegans Hypothetical
           protein T08B2.8 protein.
          Length = 159

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
 Frame = +3

Query: 105 QSGNPQLXVFLPNFWMQLVRPHP---KQLP-NIVHFHCSMEMTKYDIKNYLEKIYEVPVV 272
           Q GNPQ  VFLP+FWM +V        +LP N V F     M+++DI+ YL KIY++PV 
Sbjct: 10  QPGNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYLTKIYDLPVR 69

Query: 273 DVRTKINMGKF----KKD-VVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEH 437
           DVRT++ MG      K D   K  + K++D K+A+V + K   F YP +FE ++ E+ E 
Sbjct: 70  DVRTEVQMGDITWNSKLDHQYKKAMWKDEDKKIAYVFMSKGFEFSYPQMFE-ALEEDLEL 128

Query: 438 AKSLDESKK 464
            K++ + ++
Sbjct: 129 VKAMKQQEE 137


>Z81558-3|CAB04541.1|  356|Caenorhabditis elegans Hypothetical
           protein F59D12.3 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 282 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL 449
           TKIN+GK K  V   +  K++  K AF    ++  F+  + FEK +     + +S+
Sbjct: 33  TKINLGKVKTTVEAPFKNKKNRKKSAFPNKQRSRFFQTFNRFEKLLRGNYNYLRSI 88


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 186 NIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVK 323
           N + F  S +  KY IK+ + K+Y V  + V T I   + KK  V+
Sbjct: 85  NTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +3

Query: 156 LVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKKDVVKGYVI 335
           ++  + K+  N +  +C    TKY    Y+E I  + V+ ++TK ++  F       +VI
Sbjct: 285 ILTEYQKKYSNTLFHYCRTVNTKYGPSRYIEIISLINVI-LKTKSDVDNFSNIF---HVI 340

Query: 336 KEDDVK 353
           + +DVK
Sbjct: 341 QPEDVK 346


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 366  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 485
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 366  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 485
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>Z47357-3|CAA87422.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK1128.3 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 300 KFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKK 464
           K ++  ++G    +  V +  VT+PK + F+   L ++  + E  H    DE+++
Sbjct: 47  KNRRQRMEGLENVDQTVDLQLVTVPKVVPFRASRLLQEIYDRERVHGMRRDEARQ 101


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 366  TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 485
            T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 1621 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 1664


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 183 PNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDVR 281
           PN+ HFHCS+   + D+      +   PV   R
Sbjct: 290 PNLQHFHCSLPHDEIDLSQEFLALLNEPVRKTR 322


>M37235-1|AAA28122.1|  273|Caenorhabditis elegans myosin II protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 366 TLPKTMTFKYPDLFEKSINEEE---EHA-KSLDESKKNFRKYID 485
           T  K+  F+     E  INE E   +HA K+ ++++KN R+Y+D
Sbjct: 121 TKAKSELFRVKKKLEADINELEIALDHANKANEDAQKNIRRYLD 164


>AC084197-48|AAY43983.1|  250|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.44 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 306 KKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSL-DESKK 464
           +K V+     KE  V      LP+    K  D++EK+INE+ +  K   D+ KK
Sbjct: 100 EKSVILRKSRKECKVPSVVQALPEKYQKKISDIWEKNINEKVKKEKDCWDQQKK 153


>Z46242-3|CAA86338.2|  680|Caenorhabditis elegans Hypothetical
           protein F35G12.4b protein.
          Length = 680

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 441 KSLDESKKNFRKYIDHNKSRPDIPSWFSI 527
           K  D  K+ F + +D N  +  IPSWF +
Sbjct: 425 KIKDYGKRIFEEVVDENSRQVYIPSWFVV 453


>Z46242-2|CAA86335.2|  683|Caenorhabditis elegans Hypothetical
           protein F35G12.4a protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 441 KSLDESKKNFRKYIDHNKSRPDIPSWFSI 527
           K  D  K+ F + +D N  +  IPSWF +
Sbjct: 425 KIKDYGKRIFEEVVDENSRQVYIPSWFVV 453


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 DVRTKINMGKFKKDVVKGYVIKED 344
           DV  ++NMGKF+ +   GY++K D
Sbjct: 847 DVYMQLNMGKFEYNGGSGYLLKPD 870


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 DVRTKINMGKFKKDVVKGYVIKED 344
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 DVRTKINMGKFKKDVVKGYVIKED 344
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 DVRTKINMGKFKKDVVKGYVIKED 344
           DV  ++NMGKF+ +   GY++K D
Sbjct: 848 DVYMQLNMGKFEYNGGSGYLLKPD 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,079,383
Number of Sequences: 27780
Number of extensions: 230212
Number of successful extensions: 679
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)