Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J06
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   1.4  
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    27   4.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.7  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   7.6  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 592 KDDSRNLGRFYDSGAEDISS--SGSDCSTGTRGEERTDHALR 711
           K+D+ +  +  DSG  D     SG+D S    GEE++  AL+
Sbjct: 786 KEDASSTKQAKDSGTNDFDKLISGNDVSKNNSGEEQSRSALK 827


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -3

Query: 249 PMSTKVGISFHRGAKR-LNGERFSHGN--VNWSSV 154
           PM+TK+G  +++G +    G++  HG   V WS V
Sbjct: 14  PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 140  QPVTITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 238
            +P  ITDD    P  N     L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 186 FSHGNVNWSSVMVTGCAITSLSRAGKAV 103
           FSHG   WS +++ G   T  S   KAV
Sbjct: 155 FSHGRKPWSGILLYGPPGTGKSYLAKAV 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,814
Number of Sequences: 5004
Number of extensions: 50875
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)