Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_J02
         (816 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.31 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   6.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 713 LNIHTNLLWFTYNYCNMKKTAN*CKWLG 796
           L++H  LLW  + YC   K  N  K +G
Sbjct: 297 LSLHGQLLWREFFYCAATKNPNFDKMIG 324


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 700 FCVHVKHPH 726
           FC+HV+H H
Sbjct: 12  FCLHVQHSH 20


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 396 SWHPAPATPSSYGDWSDLSTKVLLLEI 476
           S HPA  TP    +  DL+ K L L I
Sbjct: 244 SSHPAIVTPGPKQELPDLNHKPLNLTI 270


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 396 SWHPAPATPSSYGDWSDLSTKVLLLEI 476
           S HPA  TP    +  DL+ K L L I
Sbjct: 136 SSHPAIVTPGPKQELPDLNHKPLNLTI 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,697
Number of Sequences: 336
Number of extensions: 4719
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)