Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J02
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 108 6e-24
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 98 6e-21
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 96 3e-20
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 87 2e-17
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 84 1e-16
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 29 4.4
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 108 bits (259), Expect = 6e-24
Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Frame = +1
Query: 430 MATGQIYLQRFYYSKSFVRYPMETMAMGSIYLASKVEEKPCRIRDVINVFHHIKQVRAQK 609
MAT Q+ RFY KSFVR+ ++ +A ++LA K+EE P R + +I VFH ++ R
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENV 60
Query: 610 TISPM-LVDQNYIELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQ 786
I + + + Y +LK+ +++ ER +LKE+GF HV+HPHK I YL L+ +L Q
Sbjct: 61 PIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLEAP---ELTQ 117
Query: 787 MAWNYXNDAL 816
AWN ND+L
Sbjct: 118 EAWNLANDSL 127
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 98.3 bits (234), Expect = 6e-21
Identities = 54/178 (30%), Positives = 100/178 (56%)
Frame = +1
Query: 283 YNCLLPESVFKETPSQADSLDIETETDLRILGCEMIQTAGILLRLPQVAMATGQIYLQRF 462
++ +L E + K +PS+ D + E+++R L C I+ GI L+LPQ+ +AT ++ RF
Sbjct: 43 FHTVLWEELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRF 102
Query: 463 YYSKSFVRYPMETMAMGSIYLASKVEEKPCRIRDVINVFHHIKQVRAQKTISPMLVDQNY 642
Y +S + +T+A I+LASKVE+ PC + VI V + R T + +
Sbjct: 103 YLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVF 162
Query: 643 IELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYXNDAL 816
+ K ++ ER +L + F +++HP++ ++ ++ L + +++ Q+AWN+ ND L
Sbjct: 163 EKQKALILTGERLVLTTVRFDFNIQHPYRPLLDAMEKLGISQ-KEVKQVAWNFVNDWL 219
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 95.9 bits (228), Expect = 3e-20
Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 10/174 (5%)
Frame = +1
Query: 325 SQADSLDIETETDLRILGCEMIQTAGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMETM 504
S+ D +D++ E+ LR C +Q G+ L++PQV +AT ++ RF+ +S + T+
Sbjct: 50 SRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTI 109
Query: 505 AMGSIYLASKVEEKPCRIRDVINVFH---HIKQVRAQKTISPMLVD-------QNYIELK 654
A ++LA KVEE P ++DVI + + H K A + I +D + Y + K
Sbjct: 110 ATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKSLDYFGVEWQEVYEQQK 169
Query: 655 NQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYXNDAL 816
++ ER +L LGF ++V HP+K +V ++ + +N L Q+AWN+ ND L
Sbjct: 170 ELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQN-ALAQVAWNFVNDGL 222
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 86.6 bits (205), Expect = 2e-17
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 28/228 (12%)
Frame = +1
Query: 217 NSQHNTPPAKLQKTYGKIVLTLYNCLLPESVFKETPSQADSLDIETETDLRILGCEMIQT 396
NS + T + ++T G++ + Y + + + +PS+ D +D++ E+ LR C +Q
Sbjct: 16 NSPYRTTQGRNEET-GELGASWY--FSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQD 72
Query: 397 AGILLRLPQVAMATGQIYLQRFYYSKSFVR---------------------YPME----- 498
G+ L++PQV +AT ++ RFY +S + PME
Sbjct: 73 LGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRCQKLRAITRKRNEYKFLLPMERDSIV 132
Query: 499 --TMAMGSIYLASKVEEKPCRIRDVINVFHHIKQVRAQKTISPMLVDQNYIELKNQVIKA 672
T+A ++LA KVEE P ++DVI V + I + + + Y + K ++ A
Sbjct: 133 VHTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLA 192
Query: 673 ERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYXNDAL 816
ER +L LGF ++V HP+K +V ++ + +N L Q+AWN+ ND L
Sbjct: 193 ERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQN-ALAQVAWNFVNDGL 239
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 83.8 bits (198), Expect = 1e-16
Identities = 49/173 (28%), Positives = 92/173 (53%), Gaps = 1/173 (0%)
Frame = +1
Query: 301 ESVFKETPSQADSLDIETETDLRILGCEMIQTAGILLRLPQVAMATGQIYLQRFYYSKSF 480
+ V + +PS+ D + E +LR C I+ G+ L+LPQV +AT + RFY +S
Sbjct: 14 DEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSH 73
Query: 481 VRYPMETMAMGSIYLASKVEEKPCRIRDVINVFHHIKQVRAQKTISPMLVDQNYIE-LKN 657
+ +T+A ++LASK+E+ PC ++ VI V + R + + + +E K
Sbjct: 74 AKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYE-TMYRKDCNAAHRIYQKEVLEKQKE 132
Query: 658 QVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNRQLMQMAWNYXNDAL 816
++ E +L + F +++HP++ + + L+ L + ++ Q+A N NDA+
Sbjct: 133 LILVGETLLLSTIRFDFNIQHPYEPLKLALKKLGIFQ-MEVKQVAVNLINDAI 184
>08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +1
Query: 262 GKIVLTLYNCLLPESVFKETPSQADSLDIETETDLRILGCEMIQTAGILLRLP 420
G +++ + PE FKE P + D+ T DLR+L E IQ GILL P
Sbjct: 1428 GGVLVVSRRMIRPE--FKELPPEHDTTVHLTPWDLRLLTVENIQ-KGILLPKP 1477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,087,647
Number of Sequences: 37544
Number of extensions: 451233
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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