Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_J02
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 171 4e-43
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 171 4e-43
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 69 5e-12
AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c prot... 34 0.14
Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z83105-5|CAB05481.1| 196|Caenorhabditis elegans Hypothetical pr... 29 5.3
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 9.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.2
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 171 bits (417), Expect = 4e-43
Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 13/178 (7%)
Frame = +1
Query: 322 PSQADSLDIETETDLRILGCEMIQTAGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMET 501
PS D L ETE++LR LGCE+IQ ILL+LPQ A ATGQI QR+YY KSFVRY E
Sbjct: 91 PSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEH 150
Query: 502 MAMGSIYLASKVEEKPCRIRDVINVFHHIKQV-RAQKT-----------ISPMLVDQNYI 645
+ LASK+EE+P R R+V NVFH ++++ R Q++ + P VD NYI
Sbjct: 151 AVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYI 210
Query: 646 ELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNR-QLMQMAWNYXNDAL 816
K +I +ERRIL LGF VHVKHPH+LIV Y L ++R ++Q +WNY ND L
Sbjct: 211 NTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTLGITQSRPDILQRSWNYMNDGL 268
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 394 TAGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMETMAMGSIYLASKVEEKP 549
T GI P + + Y+ + F+RY ET+A I+LA++ E P
Sbjct: 246 TLGITQSRPDILQRSWN-YMNDGLRTDIFMRYKPETIACACIFLAARTVENP 296
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 171 bits (417), Expect = 4e-43
Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 13/178 (7%)
Frame = +1
Query: 322 PSQADSLDIETETDLRILGCEMIQTAGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMET 501
PS D L ETE++LR LGCE+IQ ILL+LPQ A ATGQI QR+YY KSFVRY E
Sbjct: 91 PSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHFEH 150
Query: 502 MAMGSIYLASKVEEKPCRIRDVINVFHHIKQV-RAQKT-----------ISPMLVDQNYI 645
+ LASK+EE+P R R+V NVFH ++++ R Q++ + P VD NYI
Sbjct: 151 AVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMNYI 210
Query: 646 ELKNQVIKAERRILKELGFCVHVKHPHKLIVVYLQLLQYEKNR-QLMQMAWNYXNDAL 816
K +I +ERRIL LGF VHVKHPH+LIV Y L ++R ++Q +WNY ND L
Sbjct: 211 NTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTLGITQSRPDILQRSWNYMNDGL 268
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 394 TAGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMETMAMGSIYLASKVEEKP 549
T GI P + + Y+ + F+RY ET+A I+LA++ E P
Sbjct: 246 TLGITQSRPDILQRSWN-YMNDGLRTDIFMRYKPETIACACIFLAARTVENP 296
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 68.5 bits (160), Expect = 5e-12
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Frame = +1
Query: 298 PESVFKETPSQADSLDIETETDLRILGCEMIQTAGILLRL-PQVAMATGQIYLQRFYYSK 474
P K TPS L E E R G +++ G L P+ + +Y RFY
Sbjct: 7 PLEALKTTPSIRAGLTKEQELLWRREGIKLLSEVGNALNCKPRPTIGVAAVYFHRFYMIH 66
Query: 475 SFVRYPMETMAMGSIYLASKVEEKPCRIRDVINVFHHIKQVRAQKTISPMLVDQNYIELK 654
SF + E A+ ++LA KVE+ P + +DV +A T P + + Y L
Sbjct: 67 SFQSFSREVTALSCLFLAGKVEDFPKKCKDV---------CQAAVTHYPEIYSK-YQNLV 116
Query: 655 NQVIKAERRILKELGFCVHVKHPHKLIVVYLQL---LQYEKNRQLMQMAWNYXNDAL 816
+ V+ ER +L L F +HV P+ ++ Y + + EK +Q+AW + ND++
Sbjct: 117 DDVMGLERVLLHSLKFDLHVALPYDALLDYKMMFPDMNREKITDAVQIAWTFINDSI 173
>AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c protein
1 protein.
Length = 302
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 397 AGILLRLPQVAMATGQIYLQRFYYSKSFVRYPMETMAMGSIYLASKVEE 543
A + +L Q +AT IY +RFY +SF +A +++LA KVEE
Sbjct: 60 ANVGCKLRQQVIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEE 108
>Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical
protein F47H4.4 protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 493 METMAMGSIYL-ASKVEEKPCRIRDVINVFHHIKQVRAQKTISPMLVDQNYIE-LKNQVI 666
++T+ S YL K+ + +R++I + H K ++ + L D NYIE L +
Sbjct: 352 IKTVLENSSYLNVEKITLEGFSVREIIKILQHCKSRTLEEIVLGSLTDNNYIEKLVDMKQ 411
Query: 667 KAERRILKELGFCV 708
E R+ + C+
Sbjct: 412 WKEARVFESSRNCI 425
>Z83105-5|CAB05481.1| 196|Caenorhabditis elegans Hypothetical
protein F14H3.5 protein.
Length = 196
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 147 ITKTSLKRKQNDHDDRTKPT 206
+TK SLKR+++D DD T P+
Sbjct: 166 MTKKSLKRRRDDEDDETGPS 185
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 184 TTTVQNQPKSNNSQHNTPPAKLQKTYGKIVLTLYNCLLPESVFKETPSQADSLDIETETD 363
T TV+ + S+ + + K K KI+ + P+ KE S +D+E++
Sbjct: 10152 TETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLESDIS 10211
Query: 364 LRI 372
L +
Sbjct: 10212 LSL 10214
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 184 TTTVQNQPKSNNSQHNTPPAKLQKTYGKIVLTLYNCLLPESVFKETPSQADSLDIETETD 363
T TV+ + S+ + + K K KI+ + P+ KE S +D+E++
Sbjct: 10172 TETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLESDIS 10231
Query: 364 LRI 372
L +
Sbjct: 10232 LSL 10234
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 184 TTTVQNQPKSNNSQHNTPPAKLQKTYGKIVLTLYNCLLPESVFKETPSQADSLDIETETD 363
T TV+ + S+ + + K K KI+ + P+ KE S +D+E++
Sbjct: 10172 TETVEKEVASSTEKSDDSKTKEPKEKKKIIKKKKDTTKPQEASKELSSDESRIDLESDIS 10231
Query: 364 LRI 372
L +
Sbjct: 10232 LSL 10234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,621,196
Number of Sequences: 27780
Number of extensions: 419217
Number of successful extensions: 1070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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