Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I23
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    30   0.50 
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    29   1.1  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    28   1.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    28   2.0  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   4.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   4.6  
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.1  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   8.1  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 25/91 (27%), Positives = 37/91 (40%)
 Frame = +2

Query: 278 KLLSVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQFEDITLLTEPVEMWRDLKG 457
           K+L     ISK    NVK     +     S     L +  Q  D   L   +E       
Sbjct: 593 KVLRKVDMISKNQVANVKAERAVLMAQEESAFVAKLYYAFQSRDYLYLV--MEFMNGGDC 650

Query: 458 CNLLELMYKDPEKWAMTFQSYVSLTMLDMHR 550
            +LL+ +Y  PE WA  + + V+L +  +HR
Sbjct: 651 ASLLKSLYTIPESWAKIYIAEVALGLEHLHR 681


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 MSANNVKPFTVFVEGNIGSGKTTFLE 388
           M+    KP  + V G  GSGKTTF++
Sbjct: 1   MTDKEKKPCAIIVVGMAGSGKTTFMQ 26


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 458 CNLLELMYKDPEKWAMTFQSYVSLT---MLDMHRRPAPTPVKLME 583
           CNL+  +  D   WA+TFQS +  +    +DM R PA T   + E
Sbjct: 631 CNLI--LRHDAASWAVTFQSLIKESWKEQIDMQRIPAFTAQLIKE 673


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 SKMSANNVKPFTVFVEGNIGSGKTTFLEHFRQ 400
           SK  +  ++P  V + G++  GKTT L+ FR+
Sbjct: 162 SKKDSGPLRPPVVTLMGHVDHGKTTLLDAFRK 193


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 675 HSSSTANCAGWSVLFLIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETY 517
           H   +A   GWS++ +  C  + Y +L   R +     G    C+S  +  TY
Sbjct: 109 HYYLSAMIIGWSLVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTY 161


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -2

Query: 552 LRCMSNIVKETYD-----WNVIAHFSGSLYMSSKRLQPLRSRHISTGSVNKVISSN 400
           LRC+S+I K   +     W ++        +   R  P  S+H+ST S+N+V SSN
Sbjct: 618 LRCLSSIAKVVGEKMGKGWKILFETFDKADIILNR-SPT-SKHLSTSSLNRVNSSN 671


>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 441 GEILKVAIFWNSCTKIQKNG 500
           G ++   I W SC KI+K G
Sbjct: 148 GRLIDTGILWESCEKIEKLG 167


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 323 NVKPFTVFVEGNIGSGKTTFLE-HFR-QFEDITLLTEPVEM 439
           NV  F + + G+ G+GKTTF++ H   +FE   + T  VE+
Sbjct: 6   NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEV 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,226
Number of Sequences: 5004
Number of extensions: 80678
Number of successful extensions: 228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)