Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_I23
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 94 1e-19
02_01_0411 - 2998806-3000938 33 0.40
05_01_0018 + 125697-126130,126231-126356,126726-126825,126950-12... 31 1.6
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 30 2.8
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 30 2.8
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 29 4.9
02_05_1163 + 34615591-34615678,34615866-34616202,34616419-346165... 28 8.5
>01_06_1516 -
37908284-37908497,37909666-37909733,37909809-37910186,
37910315-37910393,37910433-37910749
Length = 351
Score = 94.3 bits (224), Expect = 1e-19
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Frame = +2
Query: 329 KPFTVFVEGNIGSGKTTFLEHFR----QFEDIT-LLTEPVEMWRDL--KGCNLLELMYKD 487
K T VEGNI GKTTFL+ + D+ ++ EP+ W+D+ N+L+ Y +
Sbjct: 44 KRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAE 103
Query: 488 PEKWAMTFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHIMRNNTLHPAQFAVL 667
P++ M + P++LMERS+FS R FV + N ++ + ++
Sbjct: 104 PQR-----------VMQEKESSSGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIY 152
Query: 668 DEWFRFIQHNIP-IDADLIVYLKTSPSIVYQRIKKRARSXXQCVPLSYIEELHXLHEDWL 844
D WF + ++P + D +YL+ SP ++R+ R RS V L Y+ LH HE WL
Sbjct: 153 DSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMVRKRSEEGGVTLDYLRGLHEKHESWL 212
Query: 845 I 847
+
Sbjct: 213 L 213
>02_01_0411 - 2998806-3000938
Length = 710
Score = 32.7 bits (71), Expect = 0.40
Identities = 27/100 (27%), Positives = 51/100 (51%)
Frame = -2
Query: 630 LIMCSTKQYLALNNDRSISFTGVGAGLRCMSNIVKETYDWNVIAHFSGSLYMSSKRLQPL 451
L ++ +YL+ N+ + T G+ + +SN+V WN FSG + S +L+ L
Sbjct: 238 LFHATSLEYLSFANN-GLQGTINGSLIIKLSNLVFVDLGWN---RFSGKIPNSIGQLKRL 293
Query: 450 RSRHISTGSVNKVISSN*RKCSRNVVLPLPMLPSTNTVNG 331
+ HIS+ +++ + ++ C+ V++ L STN G
Sbjct: 294 KELHISSNNLSGELPASLGDCTNLVIINL----STNKFTG 329
>05_01_0018 +
125697-126130,126231-126356,126726-126825,126950-126969,
127118-127220,127331-127469,127577-127791,127873-128523
Length = 595
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 442 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 290
PH G+ QS T Q + YV +HGEWF G+ D+ GN
Sbjct: 108 PHVAGIAGQS-----THGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGN 153
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 488 PEKWAMTFQSYVSLTMLDMHRRPAPTPVKLMERSLFSARYCFVEHIMRNNTLHPAQF-AV 664
P +A S + T L H AP+ + S FS Y F H M N +P F A
Sbjct: 87 PRGFADWSASTSAFTSLAAHSSTAPS--NAVHYS-FSPCYAFWTHYMLNKNAYPTSFPAP 143
Query: 665 LDEWFRFIQHNIPIDA 712
D+ R +N P DA
Sbjct: 144 HDDHLRLANNNHPRDA 159
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 442 PHFNGLRQQSDILKLTKMFQKCCFTATYVTFHEHGEWFNIVGTHF*DVRGN 290
PH G+ QS T Q + Y+ +HGEWF G+ D+ GN
Sbjct: 297 PHIAGIAGQS-----THGAQSVALSGGYLDDEDHGEWFLYTGSGGRDLSGN 342
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 29.1 bits (62), Expect = 4.9
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 593 FSARYC--FVEHIM-RNNTLHPAQFAVLDEWFRFIQHNIPIDADLIVYLKTSPSIVYQRI 763
FSA Y F + + RN L+ Q A ++E F + HN + L + +P V+ +
Sbjct: 375 FSAMYSASFAQFLAGRNPVLNMVQQATVEEKFLSVFHNEKMK--LKEKITATPGGVFLSL 432
Query: 764 KKRARSXXQCVPLSYIEELHXLHEDWLINRIHAEC 868
+ R V ++ + +H + EDW INR C
Sbjct: 433 GEWQRLFYIQVRVACLT-VHFIDEDWKINRKTIRC 466
>02_05_1163 +
34615591-34615678,34615866-34616202,34616419-34616582,
34616706-34616871,34617255-34617357,34617453-34617578,
34617718-34617807,34618030-34618308
Length = 450
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +2
Query: 428 PVEMWRDLKGCNLLELMYKDPEKWAMTFQSYVSLTML--DMHRRP 556
P +W+ G L Y D E+W F S SL L D R P
Sbjct: 113 PWTLWKGSLGLELFNQNYSDSEEWRQMFFSDPSLRFLYADWERLP 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,210,523
Number of Sequences: 37544
Number of extensions: 485169
Number of successful extensions: 1146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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