Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I23
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm rece...    30   2.5  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    29   5.8  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   5.8  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   5.8  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    29   5.8  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   5.8  
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 362 GSGKTTFLEHFRQFE-DITLLTEPVEMWRDLKGCNLLELMYKDPEKWAMTFQSYVSL 529
           G  K + L H   FE  I        ++  L GC L + M+ +PEK+       V+L
Sbjct: 447 GKPKNSILPHHHPFEISINTAVRQYPLFSSLYGCRLGDRMFAEPEKFCNPLGGDVNL 503


>AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 143 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 43  NYRKCITTSIKTLLNF----CYS*SMFRYPFIRMLCSKGLNLSHLTGSLWLGIG-LFALF 207
           N +  IT + +TL  F    C   S+  +PF+ +   K  N +     ++  +  L A+F
Sbjct: 245 NRQLFITLTFQTLFPFFMMYCPVGSLISFPFLEIEVGKFGNYTGAAAGIYPALEPLIAIF 304

Query: 208 *LEHFRRENIAERK 249
            ++ FRRE + +RK
Sbjct: 305 CIKDFRREVLCQRK 318


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 394
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 394
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 394
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 361 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 396


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 394
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 287 SVASNISKMSANNVKPFTVFVEGNIGSGKTTFLEHF 394
           ++ S +S        P+T+FV GN G     F EHF
Sbjct: 326 NLTSPVSIKDLRAATPYTLFVSGNNGQVPFEFTEHF 361


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = -2

Query: 726 YTIKSASIGMLCWMNRNHSSSTANCAGWSVLFLIMCSTKQYLALNNDRSISFTGVGAGLR 547
           +T+   S G+   +    +++T   AG  +      S KQ     N   +    V   + 
Sbjct: 310 FTMDPISTGVSYTVGFGQATTTLQSAGLVMTSGFPYSMKQTDVTYNVNRVGNQDVSLTMN 369

Query: 546 CMSNIVKETYDWNVIAHFSGSLYMSSKRLQPLRSRHISTGSVNKV-ISS 403
            + N   E+YD N+I  F+      S     L  + +++ S+N V ISS
Sbjct: 370 PLFNRY-ESYDTNIIVKFASGTEQGSSFPSGLNGKMVASSSINSVEISS 417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,767,939
Number of Sequences: 27780
Number of extensions: 452518
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)