Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I23
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   1.2  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 31  LLICNYRKCITTSIKTLLNFCYS 99
           +LI N R CI  SI   L FC++
Sbjct: 151 ILIKNERICILKSITCALQFCHN 173


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 7   NFLYICLDLLICNYRKCITTS 69
           N+L IC + + C+  KCI  S
Sbjct: 74  NYLGICAEGMQCSCNKCIGCS 94


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 55  CITTSIKTLLNFCYS*SMFRYPFIRMLCSKGLNL 156
           CI   +K      Y  S+F Y  + +L  +GL L
Sbjct: 223 CIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTL 256


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 55  CITTSIKTLLNFCYS*SMFRYPFIRMLCSKGLNL 156
           CI   +K      Y  S+F Y  + +L  +GL L
Sbjct: 276 CIWKGVKWTGKVVYFTSLFPYALLTILLIRGLTL 309


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 129 DALFKRIEFITFDRFSLAWHWLVCLVLTGTFSAGKYCRTQVSCSIN*LI 275
           D+ FK  + +TF   ++  H+L  L    T         ++SC++N LI
Sbjct: 122 DSFFKNAKSVTFQTMTIPNHYL-WLYKDKTILYMVKLTLKLSCAMNFLI 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,084
Number of Sequences: 438
Number of extensions: 5368
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)