Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I21
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    92   6e-20
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    92   6e-20
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    56   3e-09
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.2  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 91.9 bits (218), Expect = 6e-20
 Identities = 45/100 (45%), Positives = 58/100 (58%)
 Frame = +3

Query: 27  MNLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 206
           M + +C+  GSK  PG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 207 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 326
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 91.9 bits (218), Expect = 6e-20
 Identities = 45/100 (45%), Positives = 58/100 (58%)
 Frame = +3

Query: 27  MNLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 206
           M + +C+  GSK  PG G+  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 207 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 326
           KG  EE               IVGA+L  I  KRN +PEV
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 26/61 (42%), Positives = 30/61 (49%)
 Frame = +3

Query: 27  MNLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 206
           M +  C        PGHG   V+ D K F F  SKC     M+RNPRKV WT  YR+   
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 207 K 209
           K
Sbjct: 61  K 61


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 364 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 269
           +  L ACS C + TS       I S S AP++
Sbjct: 105 YFTLQACSTCTISTSSLSYSGTISSTSIAPSM 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,841
Number of Sequences: 5004
Number of extensions: 28113
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)