Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_I21
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 69 2e-12
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 69 2e-12
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 68 6e-12
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 57 1e-08
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 38 0.004
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 27 7.3
01_07_0324 - 42731581-42731696,42731791-42731926,42732006-427320... 27 7.3
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 68.9 bits (161), Expect = 2e-12
Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 39 LCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 215
LC G K PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 7 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 66
Query: 216 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 326
E IVGASL I KR KPEV
Sbjct: 67 AEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 68.9 bits (161), Expect = 2e-12
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +3
Query: 39 LCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 215
LC G K PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076
Query: 216 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 326
E IVGA+L I KR+ KPEV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 67.7 bits (158), Expect = 6e-12
Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +3
Query: 39 LCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-Q 215
LC G+K PG G ++ D + F F NSKC+ R P K+TWT +YR++ KK
Sbjct: 33 LCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 92
Query: 216 EEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 326
E IVGA+L I KR KPEV
Sbjct: 93 AEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/56 (48%), Positives = 29/56 (51%)
Frame = +3
Query: 27 MNLGLCAXXGSKXXPGHGKPMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 194
M L C S PGHG V+ D K F F SKC M+RNPRKV WT YR
Sbjct: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +3
Query: 111 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 194
F F SKC M+RNPRKV WT YR
Sbjct: 67 FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 76 MASPWLKWMEKPSHS*IQNVKPPI**GGILVK*HGLSCTGASSKRAKRKNKQRNVLEGPK 255
M PW W +KPS I ++ P G L++ + T S A ++ + EGP+
Sbjct: 157 MIEPWTPWWKKPSARSI-SLSPD---GSQLIRQVSVEDTDTSDPMADPESSISEIPEGPE 212
Query: 256 SS 261
S+
Sbjct: 213 SA 214
>01_07_0324 -
42731581-42731696,42731791-42731926,42732006-42732098,
42732189-42732290,42732383-42732516,42732593-42732707,
42733534-42733560,42733692-42733799,42733890-42733982,
42734066-42734365
Length = 407
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3
Query: 81 KPMVKVDG----KTFTFLNSKCEAAHLMRRNPRK 170
+P+ VDG +TF ++ EA HLM NP +
Sbjct: 265 EPLKLVDGGQSQRTFVYIKDAIEAVHLMIENPAR 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,904
Number of Sequences: 37544
Number of extensions: 196144
Number of successful extensions: 381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -