Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I20
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.2  

>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 521 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGK 637
           FP E  +  + K++LL++ +FAP   AF    +   EGK
Sbjct: 94  FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGK 132


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 673 YLPVLEANWKWLTLFQVINLAFIPPMLRVLXMN 771
           Y P L+AN+      Q+ N  F+P +L+V+  N
Sbjct: 168 YWPTLKANYILWPAVQLFNFTFVPLVLQVIFAN 200


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 485 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 637
           +P+     +++++   S SF P A K  +E  +   LM   S+Y    FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 606 ENACINGAKIKRSNNNFFASGNDADSS 526
           ENA  N      + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 358 ESYYKLRSGYSWQSSIT 408
           E YY +RS +SW+ S T
Sbjct: 276 EYYYYIRSSFSWEDSYT 292


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 657 LQSGSMSFPSNRAKEYRENACINGAKIKRSNNNFFASGN---DADSSGNSLST 508
           LQS     PS  A++ R+    +  +I  S+ + FASG+    A SS N LST
Sbjct: 183 LQSSQHIPPSTPAQKLRKKNNFDSFRISNSHISPFASGSFSPFATSSPNFLST 235


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 79   VHHXILSSQQKXKNKLLRTYIHTDMYXNFIVHYVRSDRLL 198
            +H   LS   K  N+++R  +H D   N  V ++ SD++L
Sbjct: 1063 IHFHKLS--HKNPNEIIRMILHCDDSMNECVEFLSSDKVL 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,384
Number of Sequences: 5004
Number of extensions: 47608
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)