Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_I20
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143... 49 5e-06
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133... 48 6e-06
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706... 48 1e-05
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 32 0.44
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 30 2.4
05_03_0088 - 8308587-8308649,8308682-8308738,8310403-8310501,831... 29 3.1
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 28 7.2
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 28 9.5
>11_01_0180 -
1431758-1431838,1431975-1432061,1432180-1432230,
1432275-1432367,1432496-1432568,1432657-1432751,
1433428-1433515,1433647-1433936
Length = 285
Score = 48.8 bits (111), Expect = 5e-06
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +2
Query: 311 LVASYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVP 490
L+A YL L HPI TKA+TS V+ G L Q+ + +LD P
Sbjct: 94 LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKVPKLDLKRTFVFTFLGLVLVGP 153
Query: 491 --HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGK 637
H +Y + +L AS +A +LLL++ IF+P+ + L EGK
Sbjct: 154 TLHVWYLYLSKLVTINGASGAIA-RLLLDQFIFSPIFIGVFMSLLVTLEGK 203
>12_01_0180 -
1335825-1335980,1336584-1336670,1336767-1336859,
1336985-1337057,1337153-1337247,1337917-1338004,
1338135-1338424
Length = 293
Score = 48.4 bits (110), Expect = 6e-06
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +2
Query: 311 LVASYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVP 490
L+A YL L HPI TKA+TS V+ G L Q+ + +LD P
Sbjct: 94 LLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKVPKLDLKRTFVFTFLGLVLVGP 153
Query: 491 --HYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGK 637
H +Y + +L AS +A +LLL++ IF+P+ + L EGK
Sbjct: 154 TLHVWYLYLSKLVMINGASGAIA-RLLLDQFIFSPIFIGVFMSLLVTLEGK 203
>02_02_0131 -
7065762-7065813,7065907-7065992,7066080-7066150,
7066563-7066638,7066977-7067078,7068025-7068123,
7068208-7068339
Length = 205
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 323 YLQNLYLHPIKTKAITS-CVVGTAGSLASQIVAGESIRLDPIXXXXXXXXXXXXTVPHYF 499
YL+ L LHP++TK IT+ C+ G + S+A ++ + I + H+
Sbjct: 32 YLRQLQLHPLRTKMITAGCLAGVSDSVAQKLSGYQRIEKRRLLLKMLFGFAYGGPFGHFL 91
Query: 500 YETVERLFPEESASFPLAKKLLLERLIFAP 589
++ ++ +F + + +AKK+LLE++ +P
Sbjct: 92 HKVLDYIFKGKKDTKTIAKKVLLEQITSSP 121
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 320 SYLQNLYLHPIKTKAITSCVVGTAGSLASQIVAG 421
+Y++ L HP++TKAITS V+ +Q ++G
Sbjct: 11 AYMRQLQAHPLRTKAITSGVLAGCSDAIAQKISG 44
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 293 SKPIMNLVASYLQNLYLHPI 352
S+P +NL SYLQN YLHPI
Sbjct: 692 SEPNLNL-KSYLQNAYLHPI 710
>05_03_0088 -
8308587-8308649,8308682-8308738,8310403-8310501,
8311501-8311620,8311715-8311837,8312416-8312471,
8315404-8315451,8315555-8315615
Length = 208
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 355 DESYYKLRSGYSWQSSITDRGWRIN 429
+E+YY+ RS SW S D GW ++
Sbjct: 104 NEAYYRHRSKGSWTLSTADNGWCVS 128
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 340 FTSD*DESYYKLRSGYSWQSSITDRGWRINQT*SYSRI 453
FT D DE SG + S+ T+RG+R N T +SR+
Sbjct: 245 FTVDRDEDDDDKSSGCTHPSTATNRGFRPNCTAGHSRV 282
>05_05_0195 + 23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 353 KTKAITSCVVGTAGSLASQIVAG 421
K+ A+ SC +GT+ +L QI+AG
Sbjct: 1133 KSAAVYSCFLGTSANLRYQIIAG 1155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,781
Number of Sequences: 37544
Number of extensions: 262669
Number of successful extensions: 569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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