Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I20
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -3

Query: 666 KKLLQSGSMSFPSNRAKEYRE 604
           +++L +G++ FP  RA++YR+
Sbjct: 52  RQVLPNGNLVFPPFRAEDYRQ 72


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 630 SNRAKEYRENACINGAKIKRSNNNFFASGNDADSSGN 520
           SN +     NA  N +    +NNN   + N A+ +GN
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 402 HHRSWLENQSDLILFSHLV 458
           HHR WL+    L+   HL+
Sbjct: 2   HHRMWLQQIFILLQMIHLI 20


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 NNNVSVKTDNESSSLISTEFIFTSD*DESYYKLRSGYSWQSSIT 408
           N  ++  TD+E+   + +E   T D  +   +L+   S   S+T
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVT 67


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 277 NNNVSVKTDNESSSLISTEFIFTSD*DESYYKLRSGYSWQSSIT 408
           N  ++  TD+E+   + +E   T D  +   +L+   S   S+T
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISVT 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,838
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)