Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_I18
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 77 2e-15
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 4.5
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.5
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 4.5
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 26 5.9
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 7.8
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 7.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 7.8
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 26 7.8
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 77.4 bits (182), Expect = 2e-15
Identities = 41/123 (33%), Positives = 65/123 (52%)
Frame = +2
Query: 449 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 628
+L ++ + +LE + D G+ + GYR Q ++ P KGG+RF V +K L
Sbjct: 35 VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94
Query: 629 SALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAP 808
FK A +P GG K G +PK S++E+ + ++ F +L + +IGP DVPA
Sbjct: 95 GFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPAG 152
Query: 809 DMG 817
D+G
Sbjct: 153 DIG 155
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 760 TCQKRIHWAWRG 795
TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 470 CDHILEIQFPLRR 508
CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +2
Query: 566 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 697
TPT G ST +T V+ALS L ACV P G GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 5.9
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -1
Query: 545 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 366
R+SL +N + AS+ + Q+ +L + S + + + NL+ LRQ
Sbjct: 45 RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104
Query: 365 LGGKNILPCGRTS-DSHL*EYL*AYLE 288
GGK + C TS ++ +YL Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 581 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKAGIKINPKEY-SEHELEKIT 742
GIR T +TR ++A +L+ C C VD+ F A+ GI + Y + + ++
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYANSRSVAELV 160
Query: 743 RRFTLELAKK 772
+ + LA++
Sbjct: 161 IGYIISLARQ 170
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 575 KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 694
KGG F + D A S T C +PFG GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +2
Query: 206 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 385
QN+++N R+I ++ R Y IP +D A H E F+ R Q
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719
Query: 386 KLVEDLKSRTPIEEKK 433
K V++ K I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 548 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 375
++D + + + + + EIES + + + EYR LS + + VSL S + Q R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,635,714
Number of Sequences: 5004
Number of extensions: 78494
Number of successful extensions: 252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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