Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I18
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...   117   1e-26
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...   116   2e-26
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...   114   7e-26
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    75   7e-14
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454           30   2.0  
11_06_0074 - 19821699-19823702                                         29   6.2  
11_01_0311 + 2322511-2323527                                           29   6.2  
04_03_0690 + 18751601-18753667                                         28   8.2  
01_01_0104 + 780442-781273,782514-783424                               28   8.2  

>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score =  117 bits (282), Expect = 1e-26
 Identities = 57/123 (46%), Positives = 76/123 (61%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLATFVGFRVQHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94

Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
            VP+GGAK GI   P E S  ELE++TR FT ++     IG   DVPAPDMGT  + M+W
Sbjct: 95  AVPYGGAKGGIGCTPGELSRSELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAW 152

Query: 842 IAD 850
           I D
Sbjct: 153 ILD 155


>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score =  116 bits (279), Expect = 2e-26
 Identities = 56/123 (45%), Positives = 76/123 (61%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLASFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA 94

Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
            +P+GGAK GI   P E S  ELE++TR FT ++     IG   DVPAPDMGT  + M+W
Sbjct: 95  AIPYGGAKGGIGCAPGELSTSELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAW 152

Query: 842 IAD 850
           I D
Sbjct: 153 ILD 155


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score =  114 bits (275), Expect = 7e-26
 Identities = 55/123 (44%), Positives = 78/123 (63%)
 Frame = +2

Query: 482 LEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACV 661
           ++++  + +D G     +G+R QH   R P KGGIR+  +V  DEV AL+ LMT+K A  
Sbjct: 35  IKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVA 94

Query: 662 DVPFGGAKAGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERXMSW 841
           ++P+GGAK GI  +P + S  ELE++TR FT ++     IG   DVPAPDMGT  + M+W
Sbjct: 95  NIPYGGAKGGIGCSPGDLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAW 152

Query: 842 IAD 850
           I D
Sbjct: 153 ILD 155


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 1/151 (0%)
 Frame = +2

Query: 395 EDLKSRTPIEEKKKKVAGIL-KLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTP 571
           E + S  P+  K  +   IL +L+EP +     + P   D G+  +  G+R Q S    P
Sbjct: 220 EVVHSLEPVLVKNSQHVQILERLLEP-ERCFIFRVPWVDDRGEAHVNRGFRVQFSQALGP 278

Query: 572 TKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRF 751
            +GG+RF   +T    K L+   T K A      GGA  G   +PK  SE E+ +  + F
Sbjct: 279 CRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQSF 338

Query: 752 TLELAKKGFIGPGVDVPAPDMGTGERXMSWI 844
             EL +  ++GP  D PA D+G G R M ++
Sbjct: 339 MDELYR--YLGPDQDFPAEDVGVGPREMGYL 367


>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
          Length = 748

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = +2

Query: 338 HMVEYFFHRACQVVEDKLVEDLKSRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSG 517
           H     F +   V ED  + +   +  +E  K+KV     + E  + ++ ++   +   G
Sbjct: 642 HSGRAMFDKEIAVEEDIFILEEIGKLAMECLKEKVEERPDMKEVAERLVMLRRARKHGQG 701

Query: 518 DYEMILGYRAQHSTHRTPTKGGIRFSTD 601
            Y +   +  + S   TPT  G  FST+
Sbjct: 702 SYNLSPRHHEEISIETTPTSFGADFSTN 729


>11_06_0074 - 19821699-19823702
          Length = 667

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 701 NPKEYSEHELEKITRRFTLELAKKGF 778
           N + ++EH++EKIT  ++  + K GF
Sbjct: 27  NIRSFTEHDIEKITSNYSTLIGKGGF 52


>11_01_0311 + 2322511-2323527
          Length = 338

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 642 PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSLVVSPL-NLPKKDSLGLAWMSPLLTWV 818
           PSS R  TC S+     S S P  + +++++ +L+ +P   L  + + G + + P L++ 
Sbjct: 36  PSSTRVSTCSSSSSTTASSSSPTLSVTVSYRATLLAAPAPPLQLRLTWGHSPLGPTLSFA 95

Query: 819 PA 824
           P+
Sbjct: 96  PS 97


>04_03_0690 + 18751601-18753667
          Length = 688

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 849 SAIQDIXRSPVPMSGAGTSTPGPMNP---FLASSRVKRR 742
           S   D+  SP+P SGAG + P P  P   F A+ R+ R+
Sbjct: 67  SITADLFPSPLPSSGAGPTPPPPPPPRGAFEAAERLIRQ 105


>01_01_0104 + 780442-781273,782514-783424
          Length = 580

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 704 PKEYSEHELEKITRRFTLELAKKGF 778
           P  YS  +++KITRRF  +L + GF
Sbjct: 324 PTRYSFSDVKKITRRFKEQLGQGGF 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,136,855
Number of Sequences: 37544
Number of extensions: 516485
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)