Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I12
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    77   2e-14
Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF025459-7|AAB70981.1|  132|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    29   3.3  
CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical ...    29   4.3  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    29   4.3  
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    29   4.3  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    29   4.3  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    29   4.3  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    28   7.5  
Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/127 (27%), Positives = 71/127 (55%)
 Frame = +3

Query: 324 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 503
           + +    ++GGK++R    V + + ++   +     L+  C+    +E+ Q++ ++ DDI
Sbjct: 42  RNLFDNTVIGGKYSRASLCVDTIRALQPHLRDETQELQAVCEAAATLEIIQSFYLIADDI 101

Query: 504 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETX 683
           MD S  RRG PCW+RR  VG++ A ND+ ++ S + + L+     + N  ++ E + ++ 
Sbjct: 102 MDNSETRRGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRKSK 160

Query: 684 WRTSMGQ 704
            +T +GQ
Sbjct: 161 QKTLIGQ 167


>Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical
           protein F40F9.8 protein.
          Length = 137

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 NEKKMFDDLLPEVIMTLQNKSKLSEVPQ 308
           N +  FDDLLP V++ +QN+    + P+
Sbjct: 42  NGRVSFDDLLPRVVLAIQNEEWKDDTPK 69


>AF025459-7|AAB70981.1|  132|Caenorhabditis elegans Hypothetical
           protein H14A12.5 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 93  IVDMSVFNCLKFTRKVTYKYWPQLIRYKNNSANMTTAS-KNLEIINEKKMFDDLLPE 260
           +VD+  FN  +F+ K+T +YW ++ R +N+S +    +   L+  N   + D+ LP+
Sbjct: 12  MVDLQTFNT-QFS-KITDRYWREIFRRQNDSHHPDHINVSRLQTANIITVLDENLPQ 66


>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = -2

Query: 286 DLFCSVIITSGRRSSNIFFSLIISRFFEAVVIFALLFLYLISCGQYLYVTLRVNLRQLNT 107
           D+ C V+        +  + LI S FF  + IF  + + L+     LY+ + +++R+L+ 
Sbjct: 157 DIICIVLHAVTFFDDSHPYYLIWSVFF--ITIFYTMHI-LLFLSALLYIPILISIRKLSH 213

Query: 106 LMSTMS*SPMR---W*NHIRFYFQQFS 35
           L S+   +P R   W   I F F+  S
Sbjct: 214 LASSQLNNPQRYIFWQTMILFVFKSMS 240


>CU457740-9|CAM36339.1|  357|Caenorhabditis elegans Hypothetical
           protein C50E10.9 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -3

Query: 492 AQCNMPETFRHTIPVYKPFSKYVR*LFPVFQLFCMKSQ*LFLLYVYRQPNCNEASFST-- 319
           A+ N  E F + +     +S  +  L  +F + C K   L  LY++R+   N  S ++  
Sbjct: 275 AESNYWEVFGYILDFVVSYSNCIIVLIVIFSVPCWKKSFLRPLYMFRRMQSNRVSMASQE 334

Query: 318 -NPLFGALQITWICF 277
            +P   A QI+ I F
Sbjct: 335 KDPEEDARQISSIYF 349


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +3

Query: 294  SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-----EKVTEHTLK-MACKL 452
            S V  + D +KK        G+ H RG   ++ Y+  E       +K TEH +  + C  
Sbjct: 874  SSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGCVMCSP 933

Query: 453  GWCVEMFQAYCIVLDDI 503
            G C  +F+AY ++ D++
Sbjct: 934  G-CFSLFRAYALMDDNV 949


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 292 NLDLFCSVIITSGRRSSNIFFSLIISRFFEAVVIFALLF 176
           NL+LF +   T   RS+ IFF+   +  F  +++F L+F
Sbjct: 141 NLELFFACFNTCIFRSNRIFFNSAANLNFATILVFFLIF 179


>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 202 AVVIFALLFLYLISCGQYLYVTLRVNLRQLNTLMSTMS*SPMRW 71
           AVVI  +L   LI    +LY+ + +++R+L  L S    +P R+
Sbjct: 196 AVVINQILLHILIFVSGFLYIPIIISVRKLAHLASAQQNNPQRY 239


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
 Frame = +3

Query: 294  SEVPQIGDWLKKMLHYNLVGGK-HTRGITTVISYKTIEKP-----EKVTEHTLK-MACKL 452
            S V  + D +KK        G+ H RG   ++ Y+  E       +K TEH +  + C  
Sbjct: 874  SSVYLLVDLMKKNRRLGAACGRIHPRGDGAMVWYQKFEYAIGHWLQKATEHMIGCVMCSP 933

Query: 453  GWCVEMFQAYCIVLDDI 503
            G C  +F+AY ++ D++
Sbjct: 934  G-CFSLFRAYALMDDNV 949


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +3

Query: 222 INEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTI 401
           I    M DD+   ++   + + KL +  ++ DW ++ + +NL        +   ++   I
Sbjct: 81  IKHSVMIDDVQKVIVEQKEKRDKLRKQVRLHDWREQKVQFNLAQYHSFADVINYLNSLAI 140

Query: 402 EKPEKVT 422
             PE V+
Sbjct: 141 TYPELVS 147


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 447 KLGWCVEMFQAYCIVLDDIMDGSSVRRG 530
           K+G   EM     +V DD++D ++ RRG
Sbjct: 137 KIGMIAEMIHTASLVHDDVIDEANTRRG 164


>Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 ITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 497
           I+T++S K   K   VTE+ ++M C L   + M Q   + L+
Sbjct: 20  ISTLVSVKPWHKTLDVTENEIRMVCVLARQIFMHQPMLLELE 61


>Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 ITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 497
           I+T++S K   K   VTE+ ++M C L   + M Q   + L+
Sbjct: 20  ISTLVSVKPWHKTLDVTENEIRMVCVLARQIFMHQPMLLELE 61


>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 231 KKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKP 410
           KK  + L+ E+       +KLS +P     L+K +  N V    + GI +      +EK 
Sbjct: 226 KKQINSLIQELCSISIANAKLSTLPLFNQCLEKTVKPNSVKAVDSLGIGSKEQEDKLEKF 285

Query: 411 EKVTEHTLKM 440
            K +E  L+M
Sbjct: 286 LKPSEFFLEM 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,924,737
Number of Sequences: 27780
Number of extensions: 377892
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)