Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_I07
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321... 36 0.037
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 29 3.2
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 29 4.3
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 29 5.6
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 5.6
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 28 7.4
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 28 7.4
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 28 7.4
03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369... 28 7.4
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 7.4
12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725... 28 9.8
07_01_0843 - 6851354-6851518,6851654-6852448 28 9.8
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 9.8
>03_01_0418 -
3211687-3211933,3212016-3212164,3212443-3212551,
3212650-3212840,3212967-3213102,3213216-3213716,
3213819-3213923,3214008-3214095,3214195-3214266,
3214692-3214762,3215726-3216008,3216388-3216463
Length = 675
Score = 35.9 bits (79), Expect = 0.037
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 181 YKXTRYGKQIIRHASTTTKEP*KVLSTKTKNTNTESHMRSTQKLTMVKIQFSSVMYCLDL 360
Y+ + G R +S T +EP V +KT+ ++ SH RS + + + + LD
Sbjct: 139 YQEEQGGDDEWRGSSFTRREPSTVKKSKTERSSRRSHERS--RRGKIDLDAAEATVTLDY 196
Query: 361 KIICST*RLSCRKPTN-LNTSDLIH 432
KI +T + R P N ++ D +H
Sbjct: 197 KIFVATWNVGGRSPPNTMSLEDWLH 221
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 253 LSTKTKNTNTESHMRSTQKLTMVKIQFSSVMYCLDLKIICST*RLSCRKPTNLNTSDLIH 432
L + KN M+ T+ M+ +Q + + + +K +CS + + R+ L DL H
Sbjct: 1813 LVIRDKNPADSDSMKQTRFTEMLAVQIYRIAFLI-MKFLCSQAKEAVRRAEELEFLDLAH 1871
Query: 433 KP 438
P
Sbjct: 1872 FP 1873
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 546 RYEVKNYNELLGLLEKHEIWDYFNFNTGFDKSAFDVSQYDCDDENVEEHTLQSETVTKFL 725
R +VKN ++L L H W Y +TG + D ++ +L +T T+ L
Sbjct: 233 RCQVKN--QILVLKTTHSFWRYLQAHTGLGR---------LPDGTIDAESLFWKTHTERL 281
Query: 726 MFMDPENDKHVNHVFNSF 779
+ PEN++ ++ +F +
Sbjct: 282 QWGPPENEELLDQLFRGY 299
>02_01_0331 +
2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 645 FDVSQYDCDDENVEEHTLQSETVTKFLMFMDPEN 746
+++ QYDCD E + + LQ +V+ L F EN
Sbjct: 273 YEIVQYDCDTEIMHSYVLQEVSVSDQL-FQSSEN 305
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 465 EDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNEL 575
ED+D+ + ++W + KN++WHP R + + E+
Sbjct: 476 EDADVSAAELCSLWEN-EIKNSDWHPFRVVMVDGKEM 511
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 745 FSGSMNMRNLVTVSLCNVCSSTFSSS 668
FSGS+ + N T+ L N+ S+TFS S
Sbjct: 308 FSGSVPVVNSTTLKLLNLSSNTFSGS 333
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 585 LEKHEIWDYFNFNTGFDKSA 644
LEKHE WDY N G+ A
Sbjct: 388 LEKHEQWDYINETLGYSLMA 407
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 393 PETDKFEYVGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNY 566
P +D+ Y D ++ ++D+ E T++ +A YD K ++H V+ +K Y
Sbjct: 67 PSSDEERYSSDDESYSSDSDD--SDDASEELDTVQADFAFYDPKPGDFHGVKLLLKTY 122
>03_05_0922 -
28835983-28836129,28836328-28836474,28836782-28836910,
28837201-28837278,28841639-28841812
Length = 224
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 558 KNYNELLGLLEKHEIWDYFNFNTGFDKSAFDV-SQYDCDDENV 683
KN+NE+ + E E+W+ G +K D+ +Y+ + N+
Sbjct: 167 KNFNEITSIQEAKELWEKIQQRQGLNKWRPDLEEEYEDQEGNI 209
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 417 VGPDSQTVENTI-KFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVK 560
V PDS I K A D +TK IKT+ + +E N W P +E K
Sbjct: 148 VRPDSGVSRLVIEKLSAGAPDTQTK-IKTLTSIAEEHNIKWEPKAFEEK 195
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 507 ATYDEKNNNWHPVRYEVKNYNELLGLLEKHEIWDYFNFNTGFDKSAFDVSQYDCD--DEN 680
AT+D++N + + Y + G IWD N G D SA QYD D +EN
Sbjct: 532 ATFDQENTDNYYSNYSSSHGTFTHG---SSTIWDSQNDKAGPDSSAVVFDQYDSDVGEEN 588
Query: 681 V 683
+
Sbjct: 589 L 589
>12_02_0170 -
14871985-14872110,14872239-14872454,14872541-14872588,
14872960-14873061,14873144-14873254,14873388-14873483,
14873579-14873697,14874014-14874095,14874149-14874218,
14874320-14874382,14874487-14874602,14874731-14874817
Length = 411
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 441 ENTIKFVAEDSDLETKTIKTIWATYDEKNNNWHPVR-YEVKNYNELL 578
E +K V ++++ ++++TIW N WH VR + N LL
Sbjct: 365 EVIVKAVDSSANVQPESVETIWNLRGILNTCWHRVRLLTIHNLRSLL 411
>07_01_0843 - 6851354-6851518,6851654-6852448
Length = 319
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 468 DSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNELLGLL 587
D+D+ KT+ T A + +H +YE Y+EL+ +L
Sbjct: 145 DADMIDKTLSTFHANHVNIQRQYHQAKYE--KYSELVSVL 182
>06_03_1190 - 28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Frame = +3
Query: 192 SVWKTNHSSRVDYNKGAVKSIIDENEKHKYGVSYEIHPETDDGEDPIFKCNVLLGSEDNM 371
S+W+ H++ + A + ++ ENE Y IH E + I CN + ++ +
Sbjct: 716 SLWENPHAAAASWKPCAERHLVPENETSGY---IFIHAEGGLNQQRIAICNAVAIAK--I 770
Query: 372 FDLKVILPETDKFEYVGPDSQTVEN--TIKFVAEDSDLETKTIKTIWATYDEKNNNWHPV 545
+ +ILP K + + D E+ + + + + ++ I + EK+ + +
Sbjct: 771 MNATLILPVL-KQDQIWKDQTKFEDIFDVDYFINYLKDDVRIVRDIPEWFTEKDELFTSI 829
Query: 546 RYEVKN 563
+ VKN
Sbjct: 830 KRTVKN 835
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,273
Number of Sequences: 37544
Number of extensions: 376846
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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