Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I04
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    35   0.089
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    29   5.9  

>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +2

Query: 149 LLFSFIYCVIVTSLCTVLTMQ**LIVAVQYYKTKCIHSLLLTLGKNTRINIVHQHCKAIF 328
           LLFS + C++  + C++LT+   L++A+  + T  +H+   T     R+N   +  +A++
Sbjct: 147 LLFSAVSCMLWLTSCSLLTVLWALLIAI--FAT-LLHASFRTPNLKARLNTFREEFRAVW 203

Query: 329 LNCQSC 346
            N  SC
Sbjct: 204 RNYSSC 209


>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 570 WSQEIKGLHNLMWCVVCGAWWLNGA*KVKLIFCRSMSSTLANFHYHNIKVAGK--YQLLL 743
           WS  I  LH+L+ C+VC +    GA + +L+ C  + S   N   H     GK     + 
Sbjct: 650 WSHGISLLHDLIPCLVCLS--AKGATETELV-CFILKSISDNRIAHVSHSGGKNHNSFMG 706

Query: 744 DSN*GKCGC 770
            S+  +CGC
Sbjct: 707 SSSTNRCGC 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,888,072
Number of Sequences: 37544
Number of extensions: 339971
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)