Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_I04
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    29   0.068
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 128 ICLSHITCRRHKNNYFLAGFLVAFLVRTF 42
           IC S I  R H   Y + GFL+A +V+ F
Sbjct: 144 ICTSGIVGRTHTVGYIIIGFLLAGIVQPF 172


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 733 WYLPATFILW*WKFARVDDIDLQNISL 653
           WY+P+   +W   +    DID++ + +
Sbjct: 596 WYVPSLDQVWILNWRNQKDIDVKTVQV 622


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 765 HISLSYYRA-EVGIYLQPLYYGSGN 694
           HI  + Y    + +   PLY+G+GN
Sbjct: 849 HIGFTMYTTCVIWLAFVPLYFGTGN 873


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,015
Number of Sequences: 438
Number of extensions: 4382
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)