Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_H20
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 31 0.27
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.5
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 27 2.5
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 4.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 4.4
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.4
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 4.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 5.8
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 7.6
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S... 26 7.6
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 30.7 bits (66), Expect = 0.27
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 521 TVPKTRNLERAPRDVNQHRPVVKMEKTVLQTKQNLLQPVHLEQAL*SGPDXRFWDTARII 700
T+ + N E +H+P E V + QN+L +H E+ RF I
Sbjct: 118 TLNEEENEEMESSINEEHKPGTN-EIDVPKVIQNILDALHEEK----DEQGRFLIDIFID 172
Query: 701 WPLSRIYPDYRDLIRS 748
P R+YPDY ++I+S
Sbjct: 173 LPSKRLYPDYYEIIKS 188
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 334 KKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKPDETR 498
+KK NS++N S++ + S ++N ++ SS SKHL + N + PD T+
Sbjct: 272 QKKSNSIDNLTPSSELFRKRSRDNNLSRE----SSVSSKHLDYNSRNYNKRDRDPDRTK 326
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 683 DTARIIWPLSRIYPDYRDLIRSLDFVARLDWSXTE 787
DTA +W ++R Y YR + V+ + W+ TE
Sbjct: 293 DTAINVWDITRPYIPYRTVSCHDSIVSTMHWASTE 327
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 97 LRDCIVKFKSDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTLDSK 246
LR I+K+K + SYL L G + LQP L P S + K
Sbjct: 19 LRSQIIKYKYSNVSYLNKSALRCGQATDSTHPHILQPGELTPRISAQEYK 68
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 241 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 420
SKK + SQ S+ S P + K+N V + +S + P +K+D P+
Sbjct: 349 SKKKHTGPSLSSASQPSAASSSSSS--EPSNLDKINDVKKNIEVSANEPQPRPVKEDVPK 406
Query: 421 S 423
S
Sbjct: 407 S 407
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 378 TTYYITVIN-TVHFFLVVWREQRL*RCRVNTNLAAGL 271
T+++ + ++ F+ WR+ L R RV N+ AGL
Sbjct: 1067 TSFFFQIYKISMRNFVAYWRDSSLLRARVAFNIVAGL 1103
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 232 TLDSKKSPLALLAQTCSQIGVD-STPSKPLLPPHDKKKVNSVNNSDI--ISRSSPNSNTM 402
T D+ ++ + Q VD +TPS P +P H K K+++ ++ + S S +
Sbjct: 311 TEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPVKPASLQSEEDIQL 370
Query: 403 KQDKPRSSPESKHL 444
+P S S L
Sbjct: 371 SFKQPELSASSAEL 384
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +2
Query: 380 RHQTVIQ*NKTSRDRLRKANIWRSSHTRQTL*QKSRMRLGPLPKLVRTVPKTRNLERAPR 559
+H+T ++ T+ D L + +H L ++M GP+ K R +NL+ +
Sbjct: 275 KHKTSVK-FPTNLDALNSCTM--ENHEINELTATNKMNDGPITKCARETINIKNLKTSNL 331
Query: 560 DVNQHRPVVKMEKTV 604
+ NQ+ P K ++TV
Sbjct: 332 ERNQNSP--KNKRTV 344
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 4.4
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +1
Query: 139 YLQMVVLEDGGMMATNPNQYLQPDYLAPLPS-TLDSKKSPLALLAQTCSQIGVDSTPSKP 315
Y QM L G+ N QP YLAP+PS T+ + L++ + + Q + + ++
Sbjct: 193 YPQMPSLNQPGLHIVN-----QPTYLAPVPSATVPTNSVSLSMPSFSQGQKNIPAAINQE 247
Query: 316 LLPPHDKKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPES 435
+ K+ N ++ I + P+ M D +S+ ES
Sbjct: 248 MSVGTTKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMES 291
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +1
Query: 241 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 420
+ K+ + L+ S + P PL+ + +N S S P+SN +K D
Sbjct: 488 NNKNDESSLSPAKSHAVITQAPKIPLISTFTRLSTRKSSNDFNSSNSRPSSNALKSDANE 547
Query: 421 SSPES 435
++ S
Sbjct: 548 NTDSS 552
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 5.8
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Frame = +1
Query: 163 DGGMMATNPNQYLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKK 342
D + T P+ +A P+ + K P+ Q S+ V TPS +K+K
Sbjct: 541 DQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSP------EKQK 594
Query: 343 VNS----VNNSDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKP 486
V S + N D + +S ++ KP S+P+ L ++V+T P
Sbjct: 595 VLSPPPIITNFDKETLASNEAHEAVPQKP-SAPQVTRLMAPQDSSSVVTPSP 645
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 220 PLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSP 387
P P+ + P + + T + +D+TP P L P + +++ +++S+P
Sbjct: 372 PNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTLAPQHTSSNATKHSAPPVTKSAP 427
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 691 KDHLAAFKNIPGLPGFNPLSG 753
KDH+ N PGL G NPL G
Sbjct: 152 KDHI----NFPGLAGMNPLRG 168
>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 124 SDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTL 237
S SKSY+ V+ M + ++ YL PLPSTL
Sbjct: 73 SRSKSYVSEPVIHLNVMEPLYVDHRIRSVYLQPLPSTL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,276
Number of Sequences: 5004
Number of extensions: 77391
Number of successful extensions: 276
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -