Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_H20
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0172 + 18017164-18017313,18017389-18017499,18017719-180178...    31   1.5  
04_03_0916 + 20794240-20794246,20794585-20796545                       30   2.0  
11_01_0359 - 2731522-2732346                                           30   2.6  
05_01_0261 + 2001512-2001751,2001861-2002619                           30   2.6  
06_02_0250 + 13474806-13475130,13475232-13475572                       29   6.1  
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402...    29   6.1  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   8.1  

>03_04_0172 +
           18017164-18017313,18017389-18017499,18017719-18017886,
           18017985-18018098,18019070-18019126,18019797-18020475,
           18021016-18021174,18021449-18021618
          Length = 535

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +1

Query: 220 PLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPN--- 390
           P    + S+     LL  T ++I  D   SKP     +  KV +V +++  S S+ N   
Sbjct: 238 PFGEEMYSRVRGRPLLIDTSARISDDK--SKPRPASREDHKVKTVTSAEAKSASADNASI 295

Query: 391 SNTMKQDKPRSSPE 432
           SN+ KQ++ +S PE
Sbjct: 296 SNSEKQEQKKSVPE 309


>04_03_0916 + 20794240-20794246,20794585-20796545
          Length = 655

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 40  CLTCSVCAPFAKCTLN*TPLRDCIVKFKSDSKSYLQMVVLED--GGMMATNP 189
           C   S+C PF  CT N  P  +CI  F   S   L+  VLED  GG     P
Sbjct: 140 CDVYSICGPFTVCTDNELPNCNCIKGFTITS---LEDWVLEDRTGGCSRNTP 188


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 163 DGGMMATNPNQYLQPDYLAPLPSTLDSKKSPLAL 264
           D  ++A NPN  L   Y +PL S   +  SP+A+
Sbjct: 142 DASLLADNPNSKLTVTYFSPLASVSLAPSSPIAV 175


>05_01_0261 + 2001512-2001751,2001861-2002619
          Length = 332

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 549 LSRFLVFGTVRTSFGRGPSLIRLFCYNVCLV 457
           L + +V G VR   G GP LIRLF ++ C V
Sbjct: 50  LIQTIVHGAVRNDAGNGPGLIRLF-FHDCFV 79


>06_02_0250 + 13474806-13475130,13475232-13475572
          Length = 221

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +1

Query: 196 YLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIIS 375
           Y  P     +P    +   P A  A T ++  VDS P + ++ P  KK   S +  +   
Sbjct: 100 YAPPVLSCQVPVQEQTDAPPAATEAATATETTVDSPPPQAVVMPPSKKSKRSADGENADD 159

Query: 376 RSSPNSN 396
               N N
Sbjct: 160 DQGMNGN 166


>06_01_0569 +
           4019254-4021996,4022121-4022272,4022356-4022427,
           4022521-4022673,4022749-4022912,4022990-4023137,
           4023530-4023652,4023774-4023861,4023951-4024129
          Length = 1273

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +1

Query: 193 QYLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTP-SKPLLPPHDKKKVNSVNNSDI 369
           Q  QP   + +P    S + P  +      Q+GV   P S   +P      + S+  ++ 
Sbjct: 315 QQQQPQVASYIPQMAQSFREPQQVQYINAQQLGVHGVPQSVNFVPVQMSPYMPSIPVTNS 374

Query: 370 ISRSSPNSNTMKQDKPRSSP 429
           +  S+    TMK   P S P
Sbjct: 375 MPTSAAQVGTMKPASPASEP 394


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 295 DSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDK--PRSSPESKHLAFKPYEAN 468
           D+    P  P +D+   + VNN  + S   P +    +D      SP ++HL+    EA 
Sbjct: 320 DNGSINPDQPEYDEWPFDIVNNDVVCSGFLPTAEPTLRDGIVAGESPSTQHLSNATTEAK 379

Query: 469 VITKKP 486
             TK P
Sbjct: 380 TPTKSP 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,171,660
Number of Sequences: 37544
Number of extensions: 530996
Number of successful extensions: 1370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)