Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_H12
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 29 4.1
02_05_0500 - 29538409-29539283,29540306-29541641 29 4.1
02_05_0053 - 25442186-25443189,25444359-25444914 29 4.1
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 29 4.1
11_01_0460 + 3561490-3564104,3564162-3564558 29 5.4
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595 29 5.4
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 29 5.4
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 28 7.2
03_06_0126 + 31865339-31867943,31868176-31868660 28 9.5
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 250 KVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLSL 354
K+ G++E ++ + F+T L +S+N TGQ+ S+
Sbjct: 348 KLSGNLEAIDFSKFATLTLLDLSFNSITGQVPQSI 382
>02_05_0500 - 29538409-29539283,29540306-29541641
Length = 736
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 235 GENILKVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLSLSLNSVSASIDAA 390
GE + S +G GF+ ELDS+ H+ L +N V ++ A+
Sbjct: 155 GEYLGLTNASTDGNATNGFAAVELDSVKQPYDIDDNHVGLDINGVRSNASAS 206
>02_05_0053 - 25442186-25443189,25444359-25444914
Length = 519
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 479 PLSLSVSTDTALGTSNLSCLLEKSTLKSN*TC 574
PL ++ TD A G SNL C K+T TC
Sbjct: 285 PLLATIVTDRAKGNSNLRCSPMKTTKNDTSTC 316
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 LKVRGSVEGVNAAGFSTFELDSISYNLFTGQLHLS-LSLNSVSASI 381
+++RGS+E +N + +T ++S+N TG + S +SL + A I
Sbjct: 86 VRLRGSLEALNFSALTTLTSINLSHNRLTGMIPQSIMSLKELRALI 131
>11_01_0460 + 3561490-3564104,3564162-3564558
Length = 1003
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = +1
Query: 256 RGSVEGVNAA-GFSTF-ELDSISYNLFTGQLHLSLS----LNSVSASIDAAEGEVQIF 411
RG V ++ A G TF + S+S N FTG++HLSL L ++ S + +G++ F
Sbjct: 63 RGLVGQISPALGNMTFLKFLSLSTNSFTGEIHLSLGHLHRLETLDLSNNTLQGDIPDF 120
>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
Length = 904
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 PGRCQPPAYSLFTIGSNGDKRNWALEIQFSIMPSTMRWDSARSTSPYGTAA-TQATXKGK 57
PG +P +S ++ +GD+R AL++ SI + + +GT A T T
Sbjct: 56 PGGPRPLPFSSSSMAWHGDRRGEALQVSSSINSIATAYSYRSMSDTHGTGAPTSCTPSSH 115
Query: 56 DESLHCYLSLALLM 15
D + + + ++M
Sbjct: 116 DYTKPALVVVVVVM 129
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -1
Query: 600 DASSDLT---PEQVQLDFRVDFSNRQLKF----DVPNAVSVDTDSDNGTSANAHVGHGDS 442
D SS ++ P V LDF + N K DV +A S + + +AH GHGDS
Sbjct: 353 DVSSQVSQHDPHSVPLDFEPENQNPPFKHLSRSDVSDA-SEGAEVQHAREHSAHWGHGDS 411
Query: 441 SRSVCG 424
V G
Sbjct: 412 VNLVSG 417
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 193 IVNNEYAGGWHLPGGENILKVRGSVEG 273
++NN+YAG H ++ V+GS+EG
Sbjct: 390 VINNKYAGLHHKYAYAQVIDVQGSLEG 416
>03_06_0126 + 31865339-31867943,31868176-31868660
Length = 1029
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 523 ELELSIGEINSEIQLNLFGREVGGRISDFLNKLP 624
E+ S E+ + LNLF ++ G I DF+ LP
Sbjct: 303 EIPASFSELKNLTLLNLFRNKLRGDIPDFVGDLP 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,748
Number of Sequences: 37544
Number of extensions: 358647
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -