Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_H12
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    30   2.1  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    29   4.9  
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    28   6.5  
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    28   6.5  
Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z36948-4|CAA85411.3|  615|Caenorhabditis elegans Hypothetical
           protein D2089.4a protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = -1

Query: 591 SDLTPEQVQLDFRVDFS----NRQLKFDVPNAVSVDTDS-DNGTSANAHVGHGDSSRSVC 427
           S +T   +Q+  R  F+    +R+LKFD   A+S DT+S  NG+ +N  VG      SV 
Sbjct: 174 SGMTAVPIQIRGRTLFAQYSTHRELKFDKNKAIS-DTESVANGSVSNFEVGTQQQPNSVL 232

Query: 426 GQFTVENLDFSFS 388
            +  +EN+ F  S
Sbjct: 233 -RTIIENMMFPVS 244


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 324 VVGDAIQFEGAEA--GGVDTFYGATDFQDVFSSRK 226
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 327 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 361


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 324 VVGDAIQFEGAEA--GGVDTFYGATDFQDVFSSRK 226
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 397 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 431


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 324 VVGDAIQFEGAEA--GGVDTFYGATDFQDVFSSRK 226
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 328 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 362


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 308 SNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTI-GSNGDKRNW 165
           +  K+ K            FR+F PP R  PP  + F +  +N + R+W
Sbjct: 34  TQKKLQKSKKTAKKRRDEEFRIFFPPPRVNPPIKTPFRLHNTNCEHRDW 82


>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 650 RSAGFWSTSPNTLSTDFSPDLLMRNNTCFIYKHSLQFD 763
           R+ G    S +   TDFS D L++ +  FIY   + FD
Sbjct: 693 RAFGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFD 730


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
           shorter telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 650 RSAGFWSTSPNTLSTDFSPDLLMRNNTCFIYKHSLQFD 763
           R+ G    S +   TDFS D L++ +  FIY   + FD
Sbjct: 850 RAFGLLYASLSKSETDFSADQLVKFSAMFIYAAQVNFD 887


>Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical
           protein T15H9.6 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 130 VDGIIENWISRAQLRLSPFDPIVNNEYAGGWHLPGGENILKVRGS 264
           +DG++++W+ +  +   P D + N   AGG  +P G   L V  S
Sbjct: 62  LDGLVKDWVQKTTISRIPKDQMFN---AGGKLIPFGSYRLGVHSS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,794
Number of Sequences: 27780
Number of extensions: 296625
Number of successful extensions: 1008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)