Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_H10
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 32 0.083
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 28 1.8
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 27 2.3
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 27 4.1
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 27 4.1
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.1
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 27 4.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.4
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 7.2
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 26 7.2
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 9.5
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.3 bits (70), Expect = 0.083
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 174 FGEFSELQREDFLPVLAASRSDNPEQLA 257
FGE SE RED+L L DN EQ A
Sbjct: 78 FGEMSEFHREDYLDFLKRVTPDNAEQFA 105
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 318 KLFNEWFPTWSREEQ-DRFVNKISEIDSEFGEKLHE 422
KLF+ FP W R+ Q D + N I S+ G L +
Sbjct: 11 KLFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQ 46
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 172 GLESLVNYSVKIFCRYLLHHDLITLNNWPLPW 267
G S Y+V FCR + D W L W
Sbjct: 479 GAPSFAAYAVLAFCRLFITRDKFPKGRWSLGW 510
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 324 FNEWFPTWSREEQDRFVNKI--SEIDSEFGEKL 416
+ WF WSR+++D F K+ S D+++G L
Sbjct: 219 YYNWFVEWSRDKKDWFGLKMVFSHNDTQYGNLL 251
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 46 IYCRPGPDADFDFS 5
+YC GPD+DF++S
Sbjct: 107 VYCPGGPDSDFEYS 120
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 231 RSDNPEQLAATMANMTCQDKPVSLF 305
+S NP + A T+ ++C+ KP LF
Sbjct: 37 KSQNPSEEATTVNELSCEAKPKLLF 61
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 318 KLFNEWFPTWSREEQDRFVNKIS-EIDSEFGEKLHEIIT 431
+LF WS EE R ++ E+D EF KLH +++
Sbjct: 95 RLFRRLKTHWSIEEASRGRVRVDLEVDFEFASKLHGMMS 133
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/86 (20%), Positives = 41/86 (47%)
Frame = +3
Query: 165 LQWFGEFSELQREDFLPVLAASRSDNPEQLAATMANMTCQDKPVSLFQCRIKLFNEWFPT 344
LQ + E + +D VL+ S ++ + T ++ + F+ I+ NE +
Sbjct: 537 LQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRE-NEESIS 595
Query: 345 WSREEQDRFVNKISEIDSEFGEKLHE 422
+EE ++ ++I+++ + +K HE
Sbjct: 596 LFKEEVEKLTDEITQLSERYNDKCHE 621
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 135 LTSEAQLRYLLQWFGEFSELQREDFLPVLAASRSD--NPEQLAATMANMTCQDKPVS 299
+T++ L W + + VLA S+SD N Q++ A C +K +S
Sbjct: 95 VTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHIS 151
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 7.2
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 553 YFIYITRKYYIVSNHNCESLKIFFLNEHFCVIYHFLYRTLP*QDLVLTIVPQILKILIPV 732
YF+Y+ R Y N + L I L VI FL P + + +PQ+L L P
Sbjct: 199 YFVYLLRVYCFTPNFRPQFLNILKLGS--TVISIFLLAFGP--WIYMKQIPQLLSRLFPF 254
Query: 733 CKLKLYHSIYA 765
+ L H+ +A
Sbjct: 255 SR-GLCHAYWA 264
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 KISEIDSEFGEKL-HEIITDGPKVNGTDEPWINEQNVEP 491
+I I F + L H+++ +VNGTDE + +EP
Sbjct: 536 QIKVISQLFRKALQHDLVVPNIRVNGTDEQYEGATVIEP 574
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 169 NGLESLVNYSVKIFCRYLLHHDLITLNN 252
+G + LVN + K+FC YL+ ++N
Sbjct: 876 DGHKKLVNPNTKVFCLYLVSFSYSIISN 903
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,964
Number of Sequences: 5004
Number of extensions: 63255
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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