Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_H10
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    28   7.5  
04_04_0387 + 24869594-24871480                                         28   9.9  

>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
            4683834-4684204,4684290-4684835,4684927-4685027,
            4685117-4685933,4686025-4686213,4686313-4686384,
            4686477-4686587,4686647-4686652,4686694-4686794,
            4687714-4687813,4687891-4687986,4688157-4688273,
            4688367-4688492,4688566-4688619,4688745-4688992,
            4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 315  IKLFNEWFPTWSREEQDRFVNKISEIDSEFGEKLHEIITDGPKVNG 452
            I+ F E +P+W   E+   +  I     +   + + I+ + PKV G
Sbjct: 1725 IEFFGEVYPSWRWYEKQDGIKHIQNNSDDQAPEFYNIMLERPKVKG 1770


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 285 DKPVSLFQCRIKLFNEWFPTWSREEQDRFVNKISEIDSEFGEKLHEIITDGPKVNGTDEP 464
           D  VSL    +   +EW      +  ++F N+++E+D+  G + + +    P+    + P
Sbjct: 215 DDRVSLMS-EVSDHDEWDRVEQFDMSNQFSNRLNELDAAVGFRYYWVFVRHPRWRPDELP 273

Query: 465 W 467
           W
Sbjct: 274 W 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,738,683
Number of Sequences: 37544
Number of extensions: 353911
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)