Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_H10
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    30   1.7  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    28   6.8  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 315 IKLFNEWFPTWSREEQDRFVNKISEIDSEFGEKLHEIITDGPKVNGTDEPWINEQNVEPE 494
           I+ F+E F     ++ D       E+D        +I TD         P++ E   EPE
Sbjct: 579 IETFHEKFRFADLDDDDLTPLLFQELDHPI-----DIFTDSMMEQNDSSPFLEEDEGEPE 633

Query: 495 REDQVPENIP 524
           +E+Q P+  P
Sbjct: 634 QEEQKPDEEP 643


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 315 IKLFNEWFPTWSREEQDRFVNKISEIDSEFGEKLHEIITDGPKVNGTDEPWINEQNVEPE 494
           I+ F+E F     ++ D       E+D        +I TD         P++ E   EPE
Sbjct: 579 IETFHEKFRFADLDDDDLTPLLFQELDHPI-----DIFTDSMMEQNDSSPFLEEDEGEPE 633

Query: 495 REDQVPENIP 524
           +E+Q P+  P
Sbjct: 634 QEEQKPDEEP 643


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 512 WYLILAFGFYILLIDPRFISSINFRPIS-DYFVKFLTKFGVYFRYFIDKSVLFFPRPSWK 336
           W L+++FG+   ++    +S +    IS  +++  L +   Y+  F+ +  +      W 
Sbjct: 104 WSLLISFGYRFYILHNPALSRLTLLKISIMFYILSLVQALTYWTLFVPRKEIILHAKQWF 163

Query: 335 PFIE 324
           P+ +
Sbjct: 164 PYYD 167


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 366 RFVNKISEIDSEFGEKLHEIITDGPKVNGTDEPWINEQNVEPEREDQVPENIPVE 530
           +F +   E  SE  E + + +   PK+ G+ E    ++  EPE   Q+ E   +E
Sbjct: 246 KFSDSEEETSSEEEESVSKTLAALPKIEGSGESTALKELQEPEGSGQIVEKKAIE 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,161,787
Number of Sequences: 27780
Number of extensions: 351999
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)