Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_H10
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.62 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.62 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 461 FISSINFRPISDYFVKFLTKFGVYFRYFIDKSVL 360
           F  ++ +RP + Y +KF   + +Y  YF D SV+
Sbjct: 144 FSIAVLYRPDTKY-MKFPAIYEIYPNYFFDSSVI 176


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 461 FISSINFRPISDYFVKFLTKFGVYFRYFIDKSVL 360
           F  ++ +RP + Y +KF   + +Y  YF D SV+
Sbjct: 144 FSIAVLYRPDTKY-MKFPAIYEIYPNYFFDSSVI 176


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 673 VMSYTGNDI*HKNAHLKKKF*EIHNYDLRQYNTCV*YK 560
           ++S   N   H N + K  +   +NY+   YN  + YK
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYK 118


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 270 NMTCQDKPVSLFQCRIKLFNEWFP 341
           N TC   P  +F+   K+   WFP
Sbjct: 133 NGTCLYVPPGIFKSTCKIDITWFP 156


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 287 ILTSHICHGSGQLFRVIRS*CSKYRQKI 204
           IL++ ICHG+    R+     S Y + I
Sbjct: 9   ILSARICHGNPDAKRLYDDLLSNYNRLI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,362
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)